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Sequence Set Browser

 

AAGI00000000.1 Parastagonospora nodorum SN15

Master
# of Contigs: 496 (3 are dead)
# of Proteins: 15,983
# of Scaffolds/Chrs: 109 (2 are dead)
Total length: 37,071,111 bp
BioProject: PRJNA13754
BioSample: SAMN02953619
Keywords: WGS
Annotation: Contigs, Scaffolds
Organism: Parastagonospora nodorum SN15show lineagehide lineage
Biosource:
/mol_type = genomic
/strain = SN15
WGS: AAGI01000001:AAGI01000496
Scaffolds: CH445325:CH445394, CH959327:CH959365
109 scaffolds, 15,983 proteins, total length is 37,164,226 bases
Reference:
Annotation of the Phaeosphaeria nodorum SN15 genome : Unpublished – show 32 authorshide authors
Birren,B., Lander,E., Galagan,J., Devon,K., Nusbaum,C., Jaffe,D., Butler,J., Alvarez,P., Gnerre,S., Grabherr,M., Kleber,M., Mauceli,E., Brockman,W., Rounsley,S., Young,S., LaButti,K., Pushparaj,V., DeCaprio,D., Crawford,M., Koehrsen,M., Engels,R., Montgomery,P., Pearson,M., Howarth,C., Kodira,C., Zeng,Q., Yandava,C., Alvarado,L., Oleary,S., Oliver,R.O., Solomon,P., The Broad Institute Genome Sequencing Platform
Submission:
Submitted (29-MAR-2005) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA – Lander,E., Birren,B., The Genome Sequencing Platform, The Genome Assembly Team
Submission:
Submitted (29-MAR-2005) Murdoch University, South Street, Perth, WA 6150, Australia – Oliver,R., Solomon,P.

The Parastagonospora nodorum SN15 whole genome shotgun (WGS) project has the project accession AAGI00000000. This version of the project (01) has the accession number AAGI01000000, and consists of sequences AAGI01000001-AAGI01000496.

The mitochondrial genome is GenBank Accession Number EU053989, so the mitochondrial WGS sequences (contigs AAGI01000440, AAGI01000441 and AAGI01000412; and scaffolds CH445385 and CH959327) were removed from this project. This project was sequenced and assembled by the Broad Institute of Harvard/MIT, and Calhoun annotation was added to the scaffolds in July 2006 by the Broad. The annotation was updated in November 2007 by the Australian Centre for Necrotrophic Fungal Pathogens (ACNFP), based on additional EST evidence and retrained gene predictions. The ACNFP is responsible for the assembled genome sequence and annotation.

Contigs
Download
GenBank:AAGI01.1.gbff.gz 15.4 Mb
FASTA:AAGI01.1.fsa_nt.gz 10.9 Mb
ASN.1:AAGI01.1.bbs.gz 10.3 Mb