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Sequence Set Browser

 

AAGF00000000.3 Tetrahymena thermophila SB210

Master
# of Contigs: 1,778
# of Proteins: 26,996
# of Scaffolds/Chrs: 1,158
Total length: 102,950,684 bp
BioProject: PRJNA12564
BioSample: SAMN02953617
Keywords: WGS
Annotation: Scaffolds
Organism: Tetrahymena thermophila SB210show lineagehide lineage
Biosource:
/mol_type = genomic
/strain = SB210
WGS: AAGF03000001:AAGF03001778
Scaffolds: GG662205:GG663362
1,158 scaffolds, 26,996 proteins, total length is 103,014,375 bases
Reference:
Annotation update of Tetrahymena thermophila SB210 : Unpublished – show 14 authorshide authors
Bidwell,S., Michalis,H.M., Zafar,N., Joardar,V., Miao,W., Russ,C., Eisen,J., Wu,M., Wu,D., Nierman,W., Orias,E., Delcher,A., Salzberg,S., Coyne,R.
Submission:
Submitted (04-FEB-2005) Eukaryotic Genomics, The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA – show 7 authorshide authors
Eisen,J.A., Wu,M., Wu,D., Nierman,W.C., Orias,E., Delcher,A.L., Salzberg,S.L.
Submission:
Submitted (11-SEP-2008) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA – show 7 authorshide authors
Eisen,J.A., Wu,M., Wu,D., Nierman,W.C., Orias,E., Delcher,A.L., Salzberg,S.L.

On Sep 12, 2008 this sequence version replaced gi:192792678.

The Tetrahymena thermophila SB210 whole genome shotgun (WGS) project has the project accession AAGF00000000. This version of the project (03) has the accession number AAGF03000000, and consists of sequences AAGF03000001-AAGF03001778.

The sequences of 871 contigs were updated and 781 new contigs, AAGF03000998-AAGF03001778, were added in September 2008. Annotated scaffolds were added in March 2009. Annotation was updated on the scaffolds in February 2014.

##Genome-Assembly-Data-START##
Assembly Method : Celera Assembler v. before 2009
Assembly Name : JCVI-TTA1-2.2
Genome Coverage : 9.08x
Sequencing Technology : Sanger dideoxy sequencing
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:AAGF03.1.gbff.gz 39.9 Mb
FASTA:AAGF03.1.fsa_nt.gz 28.3 Mb
ASN.1:AAGF03.1.bbs.gz 21.6 Mb
History
Minor Version Create Date
1 09/12/2008
5 11/11/2017
6 11/18/2017