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Sequence Set Browser

 

AAGD00000000.2 Caenorhabditis remanei

Master
# of Contigs: 12,680
# of Proteins: 31,476
# of Scaffolds/Chrs: 3,670
Total length: 138,406,388 bp
BioProject: PRJNA12588
BioSample: SAMN00627085
Keywords: WGS
Annotation: Contigs, Scaffolds
Organism: Caenorhabditis remaneishow lineagehide lineage
Biosource:
/mol_type = genomic
/strain = PB4641
WGS: AAGD02000001:AAGD02012680
Scaffolds: DS268407:DS272076
3,670 scaffolds, 31,476 proteins, total length is 145,442,736 bases
Reference:
PCAP assembly of the Caenorhabditis remanei genome : Unpublished – Wilson,R.K., The Caenorhabditis remanei Sequencing Consortium
Submission:
Submitted (03-FEB-2005) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park Parkway, St. Louis, MO 63108, USA – The Caenorhabditis remanei Sequencing Consortium
Submission:
Submitted (11-JUL-2007) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park Parkway, St. Louis, MO 63108, USA – Wilson,R.K., The Caenorhabditis remanei Sequencing Consortium

On Jul 17, 2007 this sequence version replaced gi:58825936.

The Caenorhabditis remanei whole genome shotgun (WGS) project has the project accession AAGD00000000. This version of the project (02) has the accession number AAGD02000000, and consists of sequences AAGD02000001-AAGD02012680.

The organism is Caenorhabditis remanei Sudhaus, 1974; strain PB4641. This strain is derived from the wild isolate EM464. It was inbred in Scott Baird's laboratory for 20 generations by transferring one gravid female per generation. The strain EM464 was established with individuals collected from a pillbug (Armadillidium vulgare) in Brooklyn, New York, NY, USA in June 1990 by Scott Baird. EM464 was described as /Caenorhabditis vulgaris/Baird, Fitch & Emmons, 1994, which was later shown to be a junior synonym of C. remanei (Sudhaus & Kiontke 1996).

Contigs
Download
GenBank:AAGD02.1.gbff.gz 57.5 Mb
FASTA:AAGD02.1.fsa_nt.gz 39.9 Mb
ASN.1:AAGD02.1.bbs.gz 48.1 Mb