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Sequence Set Browser

 

AAFR00000000.3 Monodelphis domestica

Master
# of Contigs: 72,811
# of Proteins: 0
# of Scaffolds/Chrs: 1,127
Total length: 3,501,643,220 bp
BioProject: PRJNA12561
BioSample: SAMN02953611
Keywords: WGS
Annotation: Contigs
Organism: Monodelphis domesticashow lineagehide lineage
Biosource:
/mol_type = genomic genomic
/pop_variant = pop1
WGS: AAFR03000001:AAFR03072811
Scaffolds: CM000368:CM000376, DS029321:DS030438
1,127 scaffolds, total length is 3,569,352,935 bases
Reference:
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences : Nature 447 (7141), 167-177 (2007) – show 64 authorshide authors
Mikkelsen,T.S., Wakefield,M.J., Aken,B., Amemiya,C.T., Chang,J.L., Duke,S., Garber,M., Gentles,A.J., Goodstadt,L., Heger,A., Jurka,J., Kamal,M., Mauceli,E., Searle,S.M., Sharpe,T., Baker,M.L., Batzer,M.A., Benos,P.V., Belov,K., Clamp,M., Cook,A., Cuff,J., Das,R., Davidow,L., Deakin,J.E., Fazzari,M.J., Glass,J.L., Grabherr,M., Greally,J.M., Gu,W., Hore,T.A., Huttley,G.A., Kleber,M., Jirtle,R.L., Koina,E., Lee,J.T., Mahony,S., Marra,M.A., Miller,R.D., Nicholls,R.D., Oda,M., Papenfuss,A.T., Parra,Z.E., Pollock,D.D., Ray,D.A., Schein,J.E., Speed,T.P., Thompson,K., VandeBerg,J.L., Wade,C.M., Walker,J.A., Waters,P.D., Webber,C., Weidman,J.R., Xie,X., Zody,M.C., Broad Institute Genome Sequencing Platform, Broad Institute Whole Genome Assembly Team, Graves,J.A., Ponting,C.P., Breen,M., Samollow,P.B., Lander,E.S., Lindblad-Toh,K.
Submission:
Submitted (03-NOV-2004) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02142, USA – show 6 authorshide authors
Lindblad-Toh,K., Chang,J.L., Clamp,M., Zody,M.C., Lander,E.S., The Genome Sequencing Platform, The Genome Assembly Team
Submission:
Submitted (03-JAN-2006) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA – show 6 authorshide authors
Lindblad-Toh,K., Jaffe,D.B., Chang,J.L., Clamp,M., Lander,E.S., The Genome Sequencing Platform, The Genome Assembly Team

On Jan 12, 2006 this sequence version replaced gi:63244537.

The Monodelphis domestica whole genome shotgun (WGS) project has the project accession AAFR00000000. This version of the project (03) has the accession number AAFR03000000, and consists of sequences AAFR03000001-AAFR03072811.

Contigs
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