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Sequence Set Browser

 

AAFN00000000.2 Candida tropicalis MYA-3404

Master
# of Contigs: 128
# of Proteins: 6,254
# of Scaffolds/Chrs: 24
Total length: 14,575,599 bp
BioProject: PRJNA13675
BioSample: SAMN02953608
Keywords: WGS
Annotation: Scaffolds
Organism: Candida tropicalis MYA-3404show lineagehide lineage
Biosource:
/mol_type = genomic
/strain = MYA-3404
WGS: AAFN02000001:AAFN02000128
Scaffolds: GG692395:GG692418
24 scaffolds, 6,254 proteins, total length is 14,630,139 bases
Reference:
Evolution of pathogenicity and sexual reproduction in eight Candida genomes : Nature 459 (7247), 657-662 (2009) – show 51 authorshide authors
Butler,G., Rasmussen,M.D., Lin,M.F., Santos,M.A., Sakthikumar,S., Munro,C.A., Rheinbay,E., Grabherr,M., Forche,A., Reedy,J.L., Agrafioti,I., Arnaud,M.B., Bates,S., Brown,A.J., Brunke,S., Costanzo,M.C., Fitzpatrick,D.A., de Groot,P.W., Harris,D., Hoyer,L.L., Hube,B., Klis,F.M., Kodira,C., Lennard,N., Logue,M.E., Martin,R., Neiman,A.M., Nikolaou,E., Quail,M.A., Quinn,J., Santos,M.C., Schmitzberger,F.F., Sherlock,G., Shah,P., Silverstein,K.A., Skrzypek,M.S., Soll,D., Staggs,R., Stansfield,I., Stumpf,M.P., Sudbery,P.E., Srikantha,T., Zeng,Q., Berman,J., Berriman,M., Heitman,J., Gow,N.A., Lorenz,M.C., Birren,B.W., Kellis,M., Cuomo,C.A.
Submission:
Submitted (11-MAR-2005) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA – Lander,E., Birren,B., Cuomo,C., The Genome Sequencing Platform, The Genome Assembly Team
Submission:
Submitted (09-JUN-2009) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA – show 38 authorshide authors
Birren,B., Lander,E., Galagan,J., Nusbaum,C., Devon,K., Cuomo,C., Kellis,M., Rasmussen,M.D., Grochow,J.A., Jaffe,D., Butler,J., Alvarez,P., Gnerre,S., Grabherr,M., Kleber,M., Mauceli,E., Brockman,W., MacCallum,I.A., Rounsley,S., Young,S., LaButti,K., Pushparaj,V., DeCaprio,D., Crawford,M., Koehrsen,M., Engels,R., Montgomery,P., Pearson,M., Howarth,C., Larson,L., Luoma,S., White,J., Zeng,Q., Kodira,C., Yandava,C., Alvarado,L., O'Leary,S., The Broad Institute Genome Sequencing Platform

On Jun 16, 2009 this sequence version replaced gi:61386363.

The Candida tropicalis MYA-3404 whole genome shotgun (WGS) project has the project accession AAFN00000000. This version of the project (02) has the accession number AAFN02000000, and consists of sequences AAFN02000001-AAFN02000128.

Annotated scaffolds were added in June 2009.

##Genome-Assembly-Data-START##
Genome Coverage : 8.85x
Sequencing Technology : ABI
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:AAFN02.1.gbff.gz 5.9 Mb
FASTA:AAFN02.1.fsa_nt.gz 4.2 Mb
ASN.1:AAFN02.1.bbs.gz 7.9 Mb
History
Minor Version Create Date
1 06/16/2009
5 11/11/2017
6 11/18/2017