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Sequence Set Browser


AADG00000000.6 Apis mellifera

# of Contigs: 16,501
# of Proteins: 0
# of Scaffolds/Chrs: 5,660
Total length: 229,107,307 bp
BioProject: PRJNA10625
BioSample: SAMN00002455
Keywords: WGS
Annotation: Contigs
Organism: Apis melliferashow lineagehide lineage
/mol_type = genomic genomic
/strain = DH4
WGS: AADG06000001:AADG06016501
Scaffolds: CM000054:CM000069, GL630009:GL635652
5,660 scaffolds, total length is 453,700,269 bases
Submitted (18-DEC-2003) Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA – Human Genome Sequencing Center
Submitted (04-NOV-2010) Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA – show 50 authorshide authors
Zhang,L., Deng,J., Wu,Y.-Q., Kovar,C., Aqrawi,P., Bandaranaike,D., Blankenburg,K., Chen,D., Denson,S., Dinh,H., Firestine,M., Gross,S., Han,Y., Hernandez,B., Holder,M., Jackson,L., Javaid,M., Jing,C., Jones,J., Joshi,V., Kamau,G., Korchina,V., Lee,S., Lorensuhewa,L., Mata,R., Mathew,T., Mims,S., Ngo,R., Nguyen,L., Okwuonu,G., Ongeri,F., Osuji,N., Pham,C., Puazo,M., Qu,C., Quiroz,J., Raj,R., Rio Deiros,D., Santibanez,J., Scheel,M., Scherer,S., Vee,V., Wang,M., Xin,Y., Richards,S., Reid,J.G., Newsham,I., Worley,K.C., Muzny,D.M., Gibbs,R.

On Nov 30, 2010 this sequence version replaced gi:63053474.

The Apis mellifera whole genome shotgun (WGS) project has the project accession AADG00000000. This version of the project (06) has the accession number AADG06000000, and consists of sequences AADG06000001-AADG06016501.

Contact for more information. Amel_4.5 is an improved assembly created by using ABI SOLiD sequence and Roche 454 paired-end sequence to superscaffold and fill gaps in the Amel_4.0 assembly using the Atlas-link software. The contig-level assemblies were prepared using the Atlas assembly system.

Assembly Method : Atlas assembly system v. before 2011
Assembly Name : Amel_4.5
Genome Coverage : 8x
Sequencing Technology : Sanger; SOLiD; 454
GenBank:AADG06.1.gbff.gz 80.1 Mb
 AADG06.2.gbff.gz 15.4 Mb
FASTA:AADG06.1.fsa_nt.gz 54.7 Mb
 AADG06.2.fsa_nt.gz 10.5 Mb
ASN.1:AADG06.1.bbs.gz 65.3 Mb
 AADG06.2.bbs.gz 17.4 Mb