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Sequence Set Browser

 

AACW00000000.2 Rhizopus delemar RA 99-880

Master
# of Contigs: 391
# of Proteins: 17,459
# of Scaffolds/Chrs: 83
Total length: 45,324,238 bp
BioProject: PRJNA13066
BioSample: SAMN02953598
Keywords: WGS
Annotation: Contigs, Scaffolds
Organism: Rhizopus delemar RA 99-880show lineagehide lineage
Biosource:
/mol_type = genomic
/strain = RA 99-880
WGS: AACW02000001:AACW02000391
Scaffolds: CH476732:CH476759, GG669511:GG669565
83 scaffolds, 17,459 proteins, total length is 46,148,878 bases
Reference:
The Genome Sequence of Rhizopus oryzae RA 99-880 : Unpublished – show 8 authorshide authors
Lander,E., Birren,B., Ma,L.J., Ibrahim,A., Skory,C., Wickes,B., Lang,F., The Genome Sequencing Platform, The Genome Assembly Team
Reference:
Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication : PLoS Genet. 5 (7), E1000549 (2009) – show 32 authorshide authors
Ma,L.J., Ibrahim,A.S., Skory,C., Grabherr,M.G., Burger,G., Butler,M., Elias,M., Idnurm,A., Lang,B.F., Sone,T., Abe,A., Calvo,S.E., Corrochano,L.M., Engels,R., Fu,J., Hansberg,W., Kim,J.M., Kodira,C.D., Koehrsen,M.J., Liu,B., Miranda-Saavedra,D., O'Leary,S., Ortiz-Castellanos,L., Poulter,R., Rodriguez-Romero,J., Ruiz-Herrera,J., Shen,Y.Q., Zeng,Q., Galagan,J., Birren,B.W., Cuomo,C.A., Wickes,B.L.
Reference:
Annotation of the Rhizopus oryzae genome : Unpublished – show 39 authorshide authors
Birren,B., Lander,E., Galagan,J., Nusbaum,C., Devon,K., Ma,L.-J., Jaffe,D., Butler,J., Alvarez,P., Gnerre,S., Grabherr,M., Kleber,M., Mauceli,E., Brockman,W., Rounsley,S., Young,S., LaButti,K., Pushparaj,V., DeCaprio,D., Crawford,M., Koehrsen,M., Engels,R., Montgomery,P., Pearson,M., Howarth,C., Larson,L., Luoma,S., White,J., O'Leary,S., Kodira,C., Zeng,Q., Yandava,C., Alvarado,L., Skory,C.D., Ibrahim,A., Lang,F., Wickes,B.L., Liu,B., The Broad Institute Genome Sequencing Platform
Submission:
Submitted (11-MAR-2005) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA – Lander,E., Birren,B., Ma,L., The Genome Sequencing Platform, The Genome Assembly Team
Submission:
Submitted (19-AUG-2005) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA – Lander,E., Birren,B., Ma,L.J., The Genome Sequencing Platform, The Genome Assembly Team

On Sep 19, 2005 this sequence version replaced gi:61602464.

The Rhizopus delemar RA 99-880 whole genome shotgun (WGS) project has the project accession AACW00000000. This version of the project (02) has the accession number AACW02000000, and consists of sequences AACW02000001-AACW02000391.

Annotation was added to the scaffolds in April 2012.

##Genome-Assembly-Data-START##
Assembly Method : Arachne v. 1.0
Assembly Name : RO3
Genome Coverage : 14.0x
Sequencing Technology : Sanger ABI
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:AACW02.1.gbff.gz 18.5 Mb
FASTA:AACW02.1.fsa_nt.gz 13.3 Mb
ASN.1:AACW02.1.bbs.gz 18.6 Mb