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Sequence Set Browser


AACI00000000.3 Saccharomyces kudriavzevii IFO 1802

# of Contigs: 2,055
# of Proteins: 3,764
# of Scaffolds/Chrs: 2,054
Total length: 11,187,874 bp
BioProject: PRJNA1442
BioSample: SAMN02953592
Keywords: WGS
Annotation: Contigs
Organism: Saccharomyces kudriavzevii IFO 1802show lineagehide lineage
/mol_type = genomic
/strain = IFO 1802
WGS: AACI03000001:AACI03002055
Scaffolds: JH796010:JH798063
2,054 scaffolds, total length is 11,189,057 bases
Finding functional features in Saccharomyces genomes by phylogenetic footprinting : Science 301 (5629), 71-76 (2003) – show 9 authorshide authors
Cliften,P., Sudarsanam,P., Desikan,A., Fulton,L., Fulton,B., Majors,J., Waterston,R., Cohen,B.A., Johnston,M.
Submitted (07-APR-2003) Genetics, Washington University School of Medicine, 4566 Scott Ave., St. Louis, MO 63110, USA – Cliften,P.F., Johnston,M.
Submitted (20-AUG-2012) Laboratory of Genetics, University of Wisconsin-Madison, 425-G Henry Mall, 2434 Genetics/Biotechnology Center, Madison, WI 53706-1580, USA – show 11 authorshide authors
Cliften,P., Hittinger,C.T., Wang,B., Sudarsanam,P., Desikan,A., Fulton,L., Fulton,B., Majors,J., Waterston,R., Cohen,B.A., Johnston,M.

On Aug 21, 2012 this sequence version replaced gi:77695909.

The Saccharomyces kudriavzevii IFO 1802 whole genome shotgun (WGS) project has the project accession AACI00000000. This version of the project (03) has the accession number AACI03000000, and consists of sequences AACI03000001-AACI03002055.

Contigs 9001, 9002, 9004, and 9080 are present only in Gal+ strains. They're syntenic to the GAL pseudogenes and surrounding regions. Illumina reads from all strains were allowed to assemble to either the functional or pseudogene alleles in these regions, whereas all other contigs had only IFO1802 as the reference strain. For each strain, only one allele is present and leads to significant coverage. See the full methods in Hittinger et al. 2010 (PMID:20164837) for details.

Assembly Method : PHRAP v. 0.990319
Assembly Name : Saccharomyces_kudriavzevii_strain_IFO1802_v1.0
Genome Coverage : 3.4x
Sequencing Technology : Sanger
GenBank:AACI03.1.gbff.gz 6.6 Mb
FASTA:AACI03.1.fsa_nt.gz 3.4 Mb
ASN.1:AACI03.1.bbs.gz 4.6 Mb