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AACI00000000.3 Saccharomyces kudriavzevii IFO 1802
# of Contigs: 2,055 # of Proteins: 3,764 # of Scaffolds/Chrs: 2,054 Total length: 11,187,874 bp BioProject: PRJNA1442 BioSample: SAMN02953592 Keywords: WGS Annotation: Contigs Organism: Saccharomyces kudriavzevii IFO 1802 – show lineagehide lineage Biosource:/mol_type = genomic/strain = IFO 1802 WGS: AACI03000001:AACI03002055 Scaffolds: JH796010:JH7980632,054 scaffolds, total length is 11,189,057 bases Reference:Finding functional features in Saccharomyces genomes by phylogenetic footprinting : Science 301 (5629), 71-76 (2003) – show 9 authorshide authorsCliften,P., Sudarsanam,P., Desikan,A., Fulton,L., Fulton,B., Majors,J., Waterston,R., Cohen,B.A., Johnston,M. Submission:Submitted (07-APR-2003) Genetics, Washington University School of Medicine, 4566 Scott Ave., St. Louis, MO 63110, USA – Cliften,P.F., Johnston,M. Submission:Submitted (20-AUG-2012) Laboratory of Genetics, University of Wisconsin-Madison, 425-G Henry Mall, 2434 Genetics/Biotechnology Center, Madison, WI 53706-1580, USA – show 11 authorshide authorsCliften,P., Hittinger,C.T., Wang,B., Sudarsanam,P., Desikan,A., Fulton,L., Fulton,B., Majors,J., Waterston,R., Cohen,B.A., Johnston,M.
On Aug 21, 2012 this sequence version replaced gi:77695909.
The Saccharomyces kudriavzevii IFO 1802 whole genome shotgun (WGS) project has the project accession AACI00000000. This version of the project (03) has the accession number AACI03000000, and consists of sequences AACI03000001-AACI03002055.
Contigs 9001, 9002, 9004, and 9080 are present only in Gal+ strains. They're syntenic to the GAL pseudogenes and surrounding regions. Illumina reads from all strains were allowed to assemble to either the functional or pseudogene alleles in these regions, whereas all other contigs had only IFO1802 as the reference strain. For each strain, only one allele is present and leads to significant coverage. See the full methods in Hittinger et al. 2010 (PMID:20164837) for details.
##Genome-Assembly-Data-START## Assembly Method : PHRAP v. 0.990319 Assembly Name : Saccharomyces_kudriavzevii_strain_IFO1802_v1.0 Genome Coverage : 3.4x Sequencing Technology : Sanger ##Genome-Assembly-Data-END##