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Taxonomy browser (Escherichia coli)

Escherichia coli

Taxonomy ID: 562 (for references in articles please use NCBI:txid562)

Scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

type strain of Escherichia coli: ATCC:11775
type strain of Escherichia coli: CCUG:24
type strain of Escherichia coli: CCUG:29300
type strain of Escherichia coli: CIP:54.8
type strain of Escherichia coli: DSM:30083
type strain of Escherichia coli: JCM:1649
type strain of Escherichia coli: BCCM/LMG:2092
type strain of Escherichia coli: NBRC:102203
type strain of Escherichia coli: NCCB:54008
type strain of Escherichia coli: NCTC:9001

homotypic synonym: "Bacillus coli" Migula 1895, effective name¹⁾

homotypic synonym: "Bacterium coli" (Migula 1895) Lehmann and Neumann 1896, effective name¹⁾

homotypic synonym: Enterococcus coli

includes: Escherichia sp. 3_2_53FAA

includes: Escherichia sp. MAR

includes: bacterium 10a

includes: bacterium E3

equivalent: Escherichia/Shigella coli

Inherited blast name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

synonym:	"Bacterium coli commune" Escherich 1885, effective name¹⁾
common name:	E. coli

Lineage( full ): cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia

Entrez records
Database name	Subtree links	Direct links
Nucleotide	5,461,595	4,353,525
Nucleotide GSS	564	290
Protein	39,619,565	28,625,581
Structure	8,981	5,324
Genome	1	1
Popset	5,102	5,093
Conserved Domains	45	28
GEO Datasets	13,401	7,995
PubMed Central	281,739	281,733
Gene	334,875	18,004
SRA Experiments	102,903	87,110
GEO Profiles	313,301	298,677
Protein Clusters	17,571	17,571
Identical Protein Groups	3,723,346	3,375,836
Bio Project	6,676	3,377
Bio Sample	110,369	95,124
Bio Systems	22,561	1,814
Assembly	16,002	12,470
Probe	2,210	1,804
PubChem BioAssay	16,622	14,911
Taxonomy	3,316	1

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Bacteria (Bacteriological Code).

Comments and References:

Castellani A & Chalmers AJ (1919): Castellani, A., and Chalmers, A.J. Manual of Tropical Medicine, 3rd ed. (1919). Williams Wood and Co., New York. [No PubMed abstract available.]

Escherich T (1885): Escherich, T. "Die Darmbakterien des Neugeborenen und Sauglingen" Fortschr. Med. (1885) 3:515-528,547-554.

Lapage SP et al. (1992) (reference with type strain information): Lapage, S.P., Sneath, P.H.A., Lessel, E.F., Skerman, V.B.D., Seeliger, H.P.R., and Clark, W.A. "International Code of Nomenclature of Bacteria (1990 revision)." American Society for Microbiology, Washington, D.C. (1992). [No PubMed record available.]

Lehmann KB & Neumann R (1896): Lehman, K.B., and Neumann, R. Atlas und Grundriss der Bakeriologie und Lehrbuch der speziellen bakteriologischen Diagnositk. 1st Ed., (1896) J.F. Lehmann, Munchen. [No PubMed record available.]

Martinez-Murcia AJ et al. (1999): Martinez-Murcia, A.J., Anton, A.I., Rodriguez-Valera, F. "Patterns of sequence variation in two regions of the 16S rRNA multigene family of Escherichia coli." Int. J. Syst. Bacteriol. (1999) 49:601-610.

Migula W (1895): Migula, W. "Bacteriaceae (Stabchenbacterien)." In: Engler and Prantl (Editors), Die Naturlichen Pflanzenfamilien. (1895) W. Engelmann, Leipzig, Teil I Abt. 1a, pp.20-30. [No PubMed record available.]

Skerman VBD et al. (1980): Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Genome Information

Trace records (raw single-pass reads of DNA sequence)
Sequencing Center Name
Record counts per type
PCR	ALL
BI - Broad Insititute
1,710	1,710
LGC - LGC Group llc
96	96
NIST - National Institute for Standards and Technology
144	144
Totals per type
1,950	1,950

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Escherichia coli	meta-databases	BacDive
100 records from this provider	organism-specific	BioCyc
2 records from this provider	supplemental materials	Dryad Digital Repository
Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)	taxonomy/phylogenetic	Encyclopedia of life
820 records from this provider	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Escherichia coli	culture/stock collections	Global Catalogue of Microorganisms
Related Immune Epitope Information	gene/protein/disease-specific	Immune Epitope Database and Analysis Resource
1643 records from this provider	organism-specific	Integrated Microbial Genomes
Escherichia coli	taxonomy/phylogenetic	Integrated Taxonomic Information System
Escherichia coli	taxonomy/phylogenetic	Lifemap
4 records from this provider	taxonomy/phylogenetic	NCBI taxonomy bookmarks
Escherichia coli (taxon passport)	culture/stock collections	StrainInfo
Escherichia coli	taxonomy/phylogenetic	TreeBase
Escherichia coli Castellani & Chalmers, 1919	taxonomy/phylogenetic	World Register of Marine Species

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

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