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Taxonomy browser (Clostridium perfringens SM101)

Clostridium perfringens SM101

Taxonomy ID: 289380 (for references in articles please use NCBI:txid289380)
Scientific name: Clostridium perfringens SM101
Inherited blast name: firmicutes
Rank: no rank
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
equivalent name: Clostridium perfringens str. SM101
equivalent name: Clostridium perfringens strain SM101
Lineage( abbreviated )
Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium
   Entrez records   
Database name Direct links
Nucleotide 6
Protein 4,773
Genome 1
GEO Datasets 14
PubMed Central 1
Gene 2,723
SRA Experiments 1
Identical Protein Groups 2,567
Bio Project 3
Bio Sample 2
Bio Systems 157
Assembly 2
Taxonomy 1

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.

Reference to PubMed documentMyers GS et al. (2006)
Myers, G.S., Rasko, D.A., Cheung, J.K., Ravel, J., Seshadri, R., DeBoy, R.T., Ren, Q., Varga, J., Awad, M.M., Brinkac, L.M., Daugherty, S.C., Haft, D.H., Dodson, R.J., Madupu, R., Nelson, W.C., Rosovitz, M.J., Sullivan, S.A., Khouri, H., Dimitrov, G.I., Watkins, K.L., Mulligan, S., Benton, J., Radune, D., Fisher, D.J., Atkins, H.S., Hiscox, T., Jost, B.H., Billington, S.J., Songer, J.G., McClane, B.A., Titball, R.W., Rood, J.I., Melville, S.B., and Paulsen, I.T. "Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens." Genome Res. (2006) 16:1031-1040.


Genome Information

See the TRACE Assembly
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
PRIMERWALK TRANSPOSON WGS ALL
JCVI - J. Craig Venter Institute
387 1,520 20 1,927
TIGR - The Institute for Genome Research
545 542 40,796 41,883
Totals per type
932 2,062 40,816 43,810

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Clostridium perfringens meta-databases BacDive
Clostridium perfringensSM101 organism-specific BioCyc
GOLD Multi-Isolate Organism: Go0000323 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
642555126: Clostridium perfringens SM101 organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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