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Taxonomy browser (Pan troglodytes)

Pan troglodytes

Taxonomy ID: 9598 (for references in articles please use NCBI:txid9598)
Scientific name: Pan troglodytes
Genbank common name: chimpanzee
Inherited blast name: primates
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 2 (Vertebrate Mitochondrial)
Lineage( abbreviated )
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
   Entrez records   
Database name Subtree links Direct links
Nucleotide 493,845 258,064
Nucleotide EST 17,380 5,065
Nucleotide GSS 197,607 197,607
Protein 227,521 222,554
Structure 16 16
Genome 1 1
Popset 20,849 20,831
GEO Datasets 1,747 1,730
UniGene 2,412 2,412
PubMed Central 5,536 5,536
Gene 75,739 75,739
HomoloGene 18,385 18,385
SRA Experiments 3,885 3,525
GEO Profiles 67,300 67,300
Protein Clusters 13 13
Bio Project 121 112
Bio Sample 3,723 3,580
Bio Systems 497 497
Assembly 13 12
dbVar 40,304 40,304
Clone DB 1,159,231 1,159,231
Probe 651 651
PubChem BioAssay 140 140
Taxonomy 7 1

Genome Information

Go to NCBI genomic BLAST page for Pan troglodytes
Genome view: 25 chromosomes
Names 1 2A 2B 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y
See the TRACE Assembly
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
454 CLONEEND FINISHING PCR PRIMERWALK SHOTGUN WGS ALL
BI - Broad Insititute
- - - - - - 13,288,075 13,288,075
GBF - German Research Centre for Biotechnology
- - - - - 75,946 - 75,946
IMBGA - Institute of Molecular Biotechnology Genome Analysis
- - - - - 260,106 - 260,106
NISC - NIH Intramural Sequencing Center
- - - - - 742,375 - 742,375
UOKNOR - University of Oklahoma Norman Campus, Advanced Center for Genome Technology
- - 592 - - 138,696 - 139,288
UWGL - University of Washington, Green Laboratory (UWGL)
- - - 1,056 - - - 1,056
WUGSC - Washington University, Genome Sequencing Center
844,498 3,744,840 21,830 22,545 408,351 10,316,714 18,052,711 33,411,489
Totals per type
844,498 3,744,840 22,422 23,601 408,351 11,533,837 31,340,786 47,918,335

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Pan troglodytes taxonomy/phylogenetic Animal Diversity Web
Pan troglodytes taxonomy taxonomy/phylogenetic Arctos Specimen Database
DNA barcoding : Pan troglodytes taxonomy/phylogenetic Barcodes of Life
CCR culture/stock collections Coriell Cell Repositories
2 records from this provider supplemental materials Dryad Digital Repository
Pan troglodytes (Blumenbach, 1775) taxonomy/phylogenetic Encyclopedia of life
4 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
Pan troglodytes (Blumenbach, 1775) taxonomy/phylogenetic Integrated Taxonomic Information System
Pan troglodytes Blumenbach 1775 taxonomy/phylogenetic Mammal Species of the World
3 records from this provider taxonomy/phylogenetic NHGRI genome proposal white papers
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Pan troglodytes (chimpanzee) taxonomy/phylogenetic Primate Fact Sheets
Pan troglodytes taxonomy/phylogenetic TreeBase
UCSCgb sequence screening/similarity/alignment UCSC Genome Browser
WebScipio: Pan troglodytes organism-specific WebScipio - eukaryotic gene identification
diArk: Pan troglodytes organism-specific diArk - a resource for eukaryotic genome research
2 records from provider taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Show organism modifiers



Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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