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Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
   Entrez records   
Database name Direct links Subtree links Links from type
BioProject 125 182 -
BioSample 1,099 1,373 -
Conserved Domains 3 4 -
GEO DataSets 524 685 -
Gene 1 9,155 -
Identical Protein Groups 107,149 113,674 -
Nucleotide 20,702 26,365 64
PubChem BioAssay 185 189 -
PMC 15,894 15,894 -
Protein 306,470 349,382 -
SRA 716 978 -
Structure 81 181 -
Taxonomy 21 21 -

Porphyromonas gingivalis

Taxonomy ID: 837 (for references in articles please use ncbitaxon:837)
current name
Porphyromonas gingivalis  (Coykendall et al. 1980) Shah and Collins 1988 emend. Hahnke et al. 2016
basionym:
Bacteroides gingivalis  Coykendall et al. 1980
type strain of Bacteroides gingivalis: ATCC : 33277 , CCUG : 25893 , CCUG : 25928 , CIP : 103683 , DSM : 20709 , JCM : 12257 , NCTC : 11834 , personal : 2561
NCBI BLAST name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage(full)
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas

Comments and References:

Coykendall AL et al. (1980)
Coykendall, A.L., Kaczmarek, F.S., and Slots, J. "Genetic heterogeneity in Bacteroides asaccharolyticus (Holdeman and Moore 1970) Finegold and Barnes 1977 (Approved Lists, 1980) and proposal of Bacteroides gingivalis sp. nov. and Bacteroides macacae (Slots and Genco) comb. nov." Int. J. Syst. Bacteriol. (1980) 30:559-564. [No PubMed record available.]
Hahnke RL et al. (2016)
Hahnke, R.L., Meier-Kolthoff, J.P., García-López, M., Mukherjee, S., Huntemann, M., Ivanova, N.N., Woyke, T., Kyrpides, N.C., Klenk, H.-P., and Göker, M. "Genome-based taxonomic classification of Bacteroidetes." Front. Microbiol. (2016) 7:2003.
List of Changes in Taxonomic Opinion No. 26 (2017)
"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2017) 67(7):2081-2086.
Shah HN & Collins MD (1988)
Shah H.N., and Collins M.D. "Proposal for reclassification of Bacteroides asaccharolyticus, Bacteroides gingivalis, and Bacteroides endodontalis in a new genus, Porphyromonas." Int. J. Syst. Bacteriol., (1988) 38:128-131. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Porphyromonas gingivalis type strain (BD-ID 12506) meta-databases BacDive
Porphyromonas gingivalis (Coykendall et al. 1980) Shah and Collins 1988 taxonomy/phylogenetic Encyclopedia of life
GOLD: 51 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Porphyromonas gingivalis culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
2856683550: Porphyromonas gingivalis WW2096 organism-specific Integrated Microbial Genomes
2855583053: Porphyromonas gingivalis 11A organism-specific Integrated Microbial Genomes
2846829876: Porphyromonas gingivalis KCOM 2799 organism-specific Integrated Microbial Genomes
2855538650: Porphyromonas gingivalis 15_9 organism-specific Integrated Microbial Genomes
2869007135: Porphyromonas gingivalis SU60/YH522 organism-specific Integrated Microbial Genomes
2869000616: Porphyromonas gingivalis 3_3 organism-specific Integrated Microbial Genomes
2858652038: Porphyromonas gingivalis WW2866 organism-specific Integrated Microbial Genomes
2740892220: Porphyromonas gingivalis Ando organism-specific Integrated Microbial Genomes
2858641143: Porphyromonas gingivalis WW5019 organism-specific Integrated Microbial Genomes
2869002674: Porphyromonas gingivalis WW5127 organism-specific Integrated Microbial Genomes
2858656345: Porphyromonas gingivalis ATCC 49417 organism-specific Integrated Microbial Genomes
2858649974: Porphyromonas gingivalis WW2842 organism-specific Integrated Microbial Genomes
2858645892: Porphyromonas gingivalis WW2952 organism-specific Integrated Microbial Genomes
2843224656: Porphyromonas gingivalis KCOM 3131 organism-specific Integrated Microbial Genomes
2744054966: Porphyromonas gingivalis MP4-504 organism-specific Integrated Microbial Genomes
2846822444: Porphyromonas gingivalis KCOM 2803 organism-specific Integrated Microbial Genomes
2869004880: Porphyromonas gingivalis WW2885 organism-specific Integrated Microbial Genomes
2858658550: Porphyromonas gingivalis 84_3/84_3 organism-specific Integrated Microbial Genomes
2858654178: Porphyromonas gingivalis WW3039 organism-specific Integrated Microbial Genomes
2841427693: Porphyromonas gingivalis KCOM 2801 organism-specific Integrated Microbial Genomes
2858660627: Porphyromonas gingivalis 7BTORR/7BTORR organism-specific Integrated Microbial Genomes
2834669335: Porphyromonas gingivalis 13_1 organism-specific Integrated Microbial Genomes
2597490155: Porphyromonas gingivalis HG66 organism-specific Integrated Microbial Genomes
2506381007: Porphyromonas gingivalis A7A1-28 organism-specific Integrated Microbial Genomes
2506381010: Porphyromonas gingivalis A7436 organism-specific Integrated Microbial Genomes
2506381008: Porphyromonas gingivalis 381 organism-specific Integrated Microbial Genomes
2846818122: Porphyromonas gingivalis KCOM 2798 organism-specific Integrated Microbial Genomes
2858643303: Porphyromonas gingivalis WW2881 organism-specific Integrated Microbial Genomes
2846820306: Porphyromonas gingivalis KCOM 2802 organism-specific Integrated Microbial Genomes
2847368313: Porphyromonas gingivalis KCOM 2796 organism-specific Integrated Microbial Genomes
2855576813: Porphyromonas gingivalis WW2903 organism-specific Integrated Microbial Genomes
2850631118: Porphyromonas gingivalis TDC 60 organism-specific Integrated Microbial Genomes
2855579037: Porphyromonas gingivalis WW3040 organism-specific Integrated Microbial Genomes
2855570502: Porphyromonas gingivalis WW3102 organism-specific Integrated Microbial Genomes
2847361987: Porphyromonas gingivalis KCOM 2805 organism-specific Integrated Microbial Genomes
2846827668: Porphyromonas gingivalis KCOM 2804 organism-specific Integrated Microbial Genomes
2841429966: Porphyromonas gingivalis KCOM 3001 organism-specific Integrated Microbial Genomes
2847364210: Porphyromonas gingivalis KCOM 2800 organism-specific Integrated Microbial Genomes
2855572657: Porphyromonas gingivalis 3A1 organism-specific Integrated Microbial Genomes
2855574766: Porphyromonas gingivalis AFR5B1 organism-specific Integrated Microbial Genomes
2855585092: Porphyromonas gingivalis WW2931 organism-specific Integrated Microbial Genomes
2855581071: Porphyromonas gingivalis A7A1_28 organism-specific Integrated Microbial Genomes
Porphyromonas gingivalis type strain (SI-ID 40424) meta-databases StrainInfo, Leibniz Institute DSMZ
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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