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Taxonomy browser (Porphyromonas gingivalis)

Porphyromonas gingivalis

Taxonomy ID: 837 (for references in articles please use NCBI:txid837)
current name
Porphyromonas gingivalis (Coykendall et al. 1980) Shah and Collins 1988 emend. Hahnke et al. 2016
type strain of Porphyromonas gingivalis: ATCC:33277, CCUG:25893, CCUG:25928, CIP:103683, DSM:20709, JCM:12257, NCTC:11834, personal::2561
homotypic synonym:
Bacteroides gingivalis Coykendall et al. 1980
NCBI BLAST name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas
   Entrez records   
Database name Subtree links Direct links
Nucleotide 17,523 11,863
Protein 170,872 128,055
Structure 103 42
Genome 1 1
Popset 13 13
Conserved Domains 4 3
GEO Datasets 401 308
PubMed Central 7,503 7,503
Gene 8,827 1
SRA Experiments 264 223
Protein Clusters 1,779 1,779
Identical Protein Groups 53,220 45,473
Bio Project 88 50
Bio Sample 409 344
Bio Systems 362 -
Assembly 66 46
Probe 84 84
PubChem BioAssay 119 87
Taxonomy 21 1

Comments and References:

Coykendall AL et al. (1980)
Coykendall, A.L., Kaczmarek, F.S., and Slots, J. "Genetic heterogeneity in Bacteroides asaccharolyticus (Holdeman and Moore 1970) Finegold and Barnes 1977 (Approved Lists, 1980) and proposal of Bacteroides gingivalis sp. nov. and Bacteroides macacae (Slots and Genco) comb. nov." Int. J. Syst. Bacteriol. (1980) 30:559-564. [No PubMed record available.]
Hahnke R et al. (2016)
Hahnke, R.L., Meier-Kolthoff, J.P., GarcIa-Lopez, M., Mukherjee, S., Huntemann, M., Ivanova, N.N., Woyke, T., Kyrpides, N.C., Klenk, H.-P., and Goker, M. "Genome-based taxonomic classification of Bacteroidetes." Front. Microbiol. (2016) 7:2003.
List of Changes in Taxonomic Opinion No. 26 (2017)
"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2017) 67:2081-2086.
Shah HN & Collins MD (1988)
Shah H.N., and Collins M.D. "Proposal for reclassification of Bacteroides asaccharolyticus, Bacteroides gingivalis, and Bacteroides endodontalis in a new genus, Porphyromonas." Int. J. Syst. Bacteriol., (1988) 38:128-131. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Porphyromonas gingivalis meta-databases BacDive
Porphyromonas gingivalis (Coykendall et al. 1980) Shah and Collins 1988 taxonomy/phylogenetic Encyclopedia of life
15 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Porphyromonas gingivalis culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
6 records from provider organism-specific Integrated Microbial Genomes
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

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