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Taxonomy browser (Chlamydia trachomatis)

Chlamydia trachomatis

Taxonomy ID: 813 (for references in articles please use NCBI:txid813)
current name
Chlamydia trachomatis (Busacca 1935) Rake 1957 (Approved Lists 1980) emend. Everett et al. 1999, nom. approb. 1)
type strain of Chlamydia trachomatis: ATCC:VR-571B, personal::A/Har-13, DSM:19440
homotypic synonym:
"Rickettsia trachomatis" (Busacca 1935) Foley and Parrot 1937, effective name 2)
"Chlamydozoon trachomatis" (Busacca 1935) Moshkovski 1945, effective name 2)
NCBI BLAST name: chlamydias
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Rickettsia trachomae" (sic) Busacca 1935, effective name 2)
Lineage( full )
cellular organisms; Bacteria; PVC group; Chlamydiota; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 79,505 78,937 36
Protein 344,688 275,296 -
Structure 89 38 -
Genome 1 1 -
Popset 228 228 -
Conserved Domains 14 4 -
GEO Datasets 257 219 -
PubMed Central 16,187 16,187 -
Gene 88,324 17,763 -
SRA Experiments 2,888 1,985 -
GEO Profiles 77,470 31,440 -
Protein Clusters 900 900 -
Identical Protein Groups 41,528 40,582 -
BioProject 204 84 -
BioSample 3,151 2,289 1
Assembly 357 273 1
PubChem BioAssay 184 179 -
Taxonomy 100 1 -

Notes:

Comments and References:

Bussaca A (1935)
Busacca, A. "Un germe aux caracteres de rickettsies (Rickettsia trachomae) dans les tissus trachomateux." Archives d'Ophthalmologie (1935) 52:567-572. [No PubMed record available.]
Everett KD et al. (1999)
Everett, K.D., Bush, R.M., Andersen, A.A. "Emended description of the order Chlamydiales, proposal of Parachlamydiaceae fam. nov. and Simkaniaceae fam. nov., each containing one monotypic genus, revised taxonomy of the family Chlamydiaceae, including a new genus and five new species, and standards for the identification of organisms." Int. J. Syst. Bacteriol. (1999) 49:415-440.
Fukushi H et al. (1993)
Fukushi, H., and Hirai, K. "Restriction fragment length polymorphisms of rRNA as genetic markers to differentiate Chlamydia spp." Int. J. Syst. Bacteriol. (1993) 43:613-617.
Gaydos CA et al. (1993)
Gaydos, C.A., Palmer, L., Quinn, T.C., Falkow, S., and Eiden, J.J. "Phylogenetic relationship of Chlamydia pneumoniae to Chlamydia psittaci and Chlamydia trachomatis as determined by analysis of 16S ribosomal DNA sequences." Int. J. Syst. Bacteriol. (1993) 43:610-612.
Kalman S et al. (1999)
Kalman, S., Mitchell, W., Marathe, R., Lammel, C., Fan, J., Hyman, R.W., Olinger, L., Grimwood, J., Davis, R.W., and Stephens, R.S. "Comparative genomes of Chlamydia pneumoniae and C. trachomatis." Nature Genet. (1999) 21:385-389.
Rake GW (1957)
Rake, G.W. "Family II. Chlamydiaceae Rake, Fam. Nov." In: R.S. Breed, E.G.D. Murray, and N.R. Smith (eds.), Bergey's Manual of Determinative Bacteriology, seventh edition, The Williams & Wilkins Co, Baltimore (1957). p. 957. [No PubMed record available.]
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Chlamydia trachomatis meta-databases BacDive
10 records from this provider organism-specific BioCyc
Chlamydia trachomatis (Busacca 1935) Rake 1957 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
18 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Chlamydia trachomatis culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
83 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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