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Taxonomy browser (Chlamydia trachomatis)

Chlamydia trachomatis

Taxonomy ID: 813 (for references in articles please use NCBI:txid813)
Scientific name: Chlamydia trachomatis (Busacca 1935) Rake 1957 (Approved Lists 1980) emend. Everett et al. 1999
type strain of Chlamydia trachomatis: ATCC:VR:571B
type strain of Chlamydia trachomatis: personal::A/Har-13
type strain of Chlamydia trachomatis: DSM:19440
Inherited blast name: chlamydias
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
synonym: "Chlamydozoon trachomatis" (Busacca 1935) Moshkovski 1945
synonym: "Rickettsia trachomatis" (Busacca 1935) Foley and Parrot 1937
synonym: "Rickettsia trachomae" (sic) Busacca 1935
Lineage( full )
cellular organisms; Bacteria; PVC group; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia
   Entrez records   
Database name Subtree links Direct links
Nucleotide 92,056 91,492
Nucleotide GSS 148 148
Protein 197,775 127,518
Structure 57 27
Genome 1 1
Popset 192 192
Conserved Domains 8 4
GEO Datasets 176 159
PubMed Central 10,580 10,580
Gene 87,362 17,763
SRA Experiments 2,195 1,308
GEO Profiles 77,470 31,440
Protein Clusters 900 900
Identical Protein Groups 54,377 53,433
Bio Project 173 54
Bio Sample 2,197 1,352
Bio Systems 7,105 -
Assembly 166 82
Probe 36 32
PubChem BioAssay 131 129
Taxonomy 100 1

Comments and References:

Bussaca A (1935)
Busacca, A. "Un germe aux caracteres de rickettsies (Rickettsia trachomae) dans les tissus trachomateux." Archives d'Ophthalmologie (1935) 52:567-572. [No PubMed record available.]

Reference to PubMed documentEverett KD et al. (1999)
Everett, K.D., Bush, R.M., Andersen, A.A. "Emended description of the order Chlamydiales, proposal of Parachlamydiaceae fam. nov. and Simkaniaceae fam. nov., each containing one monotypic genus, revised taxonomy of the family Chlamydiaceae, including a new genus and five new species, and standards for the identification of organisms." Int. J. Syst. Bacteriol. (1999) 49:415-440.

Reference to PubMed documentFukushi H et al. (1993)
Fukushi, H., and Hirai, K. "Restriction fragment length polymorphisms of rRNA as genetic markers to differentiate Chlamydia spp." Int. J. Syst. Bacteriol. (1993) 43:613-617.

Reference to PubMed documentGaydos CA et al. (1993)
Gaydos, C.A., Palmer, L., Quinn, T.C., Falkow, S., and Eiden, J.J. "Phylogenetic relationship of Chlamydia pneumoniae to Chlamydia psittaci and Chlamydia trachomatis as determined by analysis of 16S ribosomal DNA sequences." Int. J. Syst. Bacteriol. (1993) 43:610-612.

Reference to PubMed documentKalman S et al. (1999)
Kalman, S., Mitchell, W., Marathe, R., Lammel, C., Fan, J., Hyman, R.W., Olinger, L., Grimwood, J., Davis, R.W., and Stephens, R.S. "Comparative genomes of Chlamydia pneumoniae and C. trachomatis." Nature Genet. (1999) 21:385-389.

Rake GW (1957)
Rake, G.W. "Family II. Chlamydiaceae Rake, Fam. Nov." In: R.S. Breed, E.G.D. Murray, and N.R. Smith (eds.), Bergey's Manual of Determinative Bacteriology, seventh edition, The Williams & Wilkins Co, Baltimore (1957). p. 957. [No PubMed record available.]

Nota BeneSkerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Chlamydia trachomatis meta-databases BacDive
8 records from this provider organism-specific BioCyc
Chlamydia trachomatis (Busacca 1935) Rake 1957 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
18 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Chlamydia trachomatis culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
58 records from this provider organism-specific Integrated Microbial Genomes
Chlamydia trachomatis (taxon passport) culture/stock collections StrainInfo
Wikipedia taxonomy/phylogenetic iPhylo
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