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Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
   Entrez records   
Database name Direct links Subtree links Links from type
BioProject 120 241 -
BioSample 4,911 5,837 -
Conserved Domains 4 15 -
GEO DataSets 392 482 -
Gene 17,763 88,324 -
GTR 1 1 -
Identical Protein Groups 42,106 43,052 -
Nucleotide 85,048 85,618 36
PubChem BioAssay 222 225 -
PMC 17,898 17,898 -
Protein 303,269 373,566 -
SRA 4,308 5,271 -
Structure 42 97 -
Taxonomy 100 100 -

Chlamydia trachomatis

Taxonomy ID: 813 (for references in articles please use ncbitaxon:813)
current name
Chlamydia trachomatis  (Busacca 1935) Rake 1957 (Approved Lists 1980) emend. Everett et al. 1999
type strain of Chlamydia trachomatis: ATCC : VR-571B , personal : A/Har-13 , DSM : 19440
homotypic synonym:
"Rickettsia trachomatis"  (Busacca 1935) Foley and Parrot 1937 , effective name  1)
"Chlamydozoon trachomatis"  (Busacca 1935) Moshkovski 1945 , effective name  2)
NCBI BLAST name: chlamydias
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym "Rickettsia trachomae"  (sic) Busacca 1935 , effective name  3)
Lineage(full)
cellular organisms; Bacteria; Pseudomonadati; PVC group; Chlamydiota; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia

Notes:

Comments and References:

image:Chlamydia trachomatis
Image by from Wikimedia Commons under a Public Domain license.
* Image may not have been verified for accuracy by NCBI Taxonomy.
Bussaca A (1935)
Busacca, A. "Un germe aux caracteres de rickettsies (Rickettsia trachomae) dans les tissus trachomateux." Archives d'Ophthalmologie (1935) 52:567-572. [No PubMed record available.]
Everett KD et al. (1999)
Everett, K.D., Bush, R.M., Andersen, A.A. "Emended description of the order Chlamydiales, proposal of Parachlamydiaceae fam. nov. and Simkaniaceae fam. nov., each containing one monotypic genus, revised taxonomy of the family Chlamydiaceae, including a new genus and five new species, and standards for the identification of organisms." Int. J. Syst. Bacteriol. (1999) 49(2):415-440.
Fukushi H et al. (1993)
Fukushi, H., and Hirai, K. "Restriction fragment length polymorphisms of rRNA as genetic markers to differentiate Chlamydia spp." Int. J. Syst. Bacteriol. (1993) 43:613-617.
Gaydos CA et al. (1993)
Gaydos, C.A., Palmer, L., Quinn, T.C., Falkow, S., and Eiden, J.J. "Phylogenetic relationship of Chlamydia pneumoniae to Chlamydia psittaci and Chlamydia trachomatis as determined by analysis of 16S ribosomal DNA sequences." Int. J. Syst. Bacteriol. (1993) 43:610-612.
Kalman S et al. (1999)
Kalman, S., Mitchell, W., Marathe, R., Lammel, C., Fan, J., Hyman, R.W., Olinger, L., Grimwood, J., Davis, R.W., and Stephens, R.S. "Comparative genomes of Chlamydia pneumoniae and C. trachomatis." Nature Genet. (1999) 21:385-389.
Rake GW (1957)
Rake, G.W. "Family II. Chlamydiaceae Rake, Fam. Nov." In: R.S. Breed, E.G.D. Murray, and N.R. Smith (eds.), Bergey's Manual of Determinative Bacteriology, seventh edition, The Williams & Wilkins Co, Baltimore (1957). p. 957. [No PubMed record available.]
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30(1):225-420. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Chlamydia trachomatis type strain (BD-ID 2391) meta-databases BacDive
Chlamydia trachomatis E-547 organism-specific BioCyc
Chlamydia trachomatis E-103 organism-specific BioCyc
Chlamydia trachomatis E-8873 organism-specific BioCyc
Chlamydia trachomatis E-103 organism-specific BioCyc
Chlamydia trachomatis E-160 organism-specific BioCyc
Chlamydia trachomatis J/31-98 organism-specific BioCyc
Chlamydia trachomatis serovar L2 str. tet9 organism-specific BioCyc
Chlamydia trachomatis E-DK-20 organism-specific BioCyc
Chlamydia trachomatis F-6068 organism-specific BioCyc
Chlamydia trachomatis QH111L organism-specific BioCyc
Chlamydia trachomatis J/31-98 organism-specific BioCyc
Chlamydia trachomatis E-32931 organism-specific BioCyc
Chlamydia trachomatis E-8873 organism-specific BioCyc
Chlamydia trachomatis E-160 organism-specific BioCyc
Chlamydia trachomatis E-547 organism-specific BioCyc
Chlamydia trachomatis servovar L2 str. tet9 organism-specific BioCyc
Chlamydia trachomatis E-32931 organism-specific BioCyc
Chlamydia trachomatis E-DK-20 organism-specific BioCyc
Chlamydia trachomatis E-8873 organism-specific BioCyc
Chlamydia trachomatis QH111L organism-specific BioCyc
Chlamydia trachomatis E-DK-20 organism-specific BioCyc
Chlamydia trachomatis E-32931 organism-specific BioCyc
Chlamydia trachomatis E-103 organism-specific BioCyc
Chlamydia trachomatis F-6068 organism-specific BioCyc
Chlamydia trachomatis J/31-98 organism-specific BioCyc
Chlamydia trachomatis E-160 organism-specific BioCyc
Chlamydia trachomatis E-547 organism-specific BioCyc
Chlamydia trachomatis servovar L2 str. tet9 organism-specific BioCyc
Chlamydia trachomatis serovar L2 str. tet9 organism-specific BioCyc
Chlamydia trachomatis QH111L organism-specific BioCyc
Chlamydia trachomatis F-6068 organism-specific BioCyc
Chlamydia trachomatis (Busacca 1935) Rake 1957 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
GOLD: 105 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Chlamydia trachomatis culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
2724679383: Chlamydia trachomatis SwabB4 organism-specific Integrated Microbial Genomes
2850733363: Chlamydia trachomatis sv. Ja SQ25 organism-specific Integrated Microbial Genomes
2871951681: Chlamydia trachomatis 434Bu Hefty_Parental organism-specific Integrated Microbial Genomes
2718217778: Chlamydia trachomatis QH111L organism-specific Integrated Microbial Genomes
2859453427: Chlamydia trachomatis sv. Ia SQ06 organism-specific Integrated Microbial Genomes
2718218217: Chlamydia trachomatis SB006930 organism-specific Integrated Microbial Genomes
2849094091: Chlamydia trachomatis chxRP4F1 organism-specific Integrated Microbial Genomes
2700989225: Chlamydia trachomatis LGV1339 organism-specific Integrated Microbial Genomes
2847965109: Chlamydia trachomatis sv. H SQ24 organism-specific Integrated Microbial Genomes
2718217781: Chlamydia trachomatis E-160 organism-specific Integrated Microbial Genomes
2871950735: Chlamydia trachomatis chxRP4D10 organism-specific Integrated Microbial Genomes
2721755839: Chlamydia trachomatis E-103 organism-specific Integrated Microbial Genomes
2844349206: Chlamydia trachomatis sv. Ia SQ14 organism-specific Integrated Microbial Genomes
2700989228: Chlamydia trachomatis H17IMS organism-specific Integrated Microbial Genomes
2851292450: Chlamydia trachomatis sv. LGV2 434Bu cdu1::Tn organism-specific Integrated Microbial Genomes
2850731476: Chlamydia trachomatis sv. J SQ05 organism-specific Integrated Microbial Genomes
2721755837: Chlamydia trachomatis SB002739 organism-specific Integrated Microbial Genomes
2721755841: Chlamydia trachomatis E-547 organism-specific Integrated Microbial Genomes
2718217779: Chlamydia trachomatis E-DK-20 organism-specific Integrated Microbial Genomes
2869638229: Chlamydia trachomatis sv. K SQ19 organism-specific Integrated Microbial Genomes
2663763272: Chlamydia trachomatis R28017IMS organism-specific Integrated Microbial Genomes
2718217801: Chlamydia trachomatis SB008107 organism-specific Integrated Microbial Genomes
2700989230: Chlamydia trachomatis H31IMS organism-specific Integrated Microbial Genomes
2721755836: Chlamydia trachomatis F-6068 organism-specific Integrated Microbial Genomes
2850736200: Chlamydia trachomatis sv. J SQ02 organism-specific Integrated Microbial Genomes
2871949771: Chlamydia trachomatis sv. L2 tet9 organism-specific Integrated Microbial Genomes
2874747888: Chlamydia trachomatis chxRP1H1 organism-specific Integrated Microbial Genomes
2718217804: Chlamydia trachomatis SB013321 organism-specific Integrated Microbial Genomes
2869643113: Chlamydia trachomatis sv. D- SQ29 organism-specific Integrated Microbial Genomes
2859452477: Chlamydia trachomatis sv. Ia SQ07 organism-specific Integrated Microbial Genomes
2869644066: Chlamydia trachomatis sv. D- SQ32 organism-specific Integrated Microbial Genomes
2871953582: Chlamydia trachomatis sv. H SQ20 organism-specific Integrated Microbial Genomes
2859449539: Chlamydia trachomatis sv. Ja SQ28 organism-specific Integrated Microbial Genomes
2847962148: Chlamydia trachomatis sv. K SQ15 organism-specific Integrated Microbial Genomes
2700989227: Chlamydia trachomatis R33512 organism-specific Integrated Microbial Genomes
2847967023: Chlamydia trachomatis sv. Ia SQ10 organism-specific Integrated Microbial Genomes
2871954531: Chlamydia trachomatis sv. Ia SQ09 organism-specific Integrated Microbial Genomes
2718218195: Chlamydia trachomatis SB013112 organism-specific Integrated Microbial Genomes
2700989229: Chlamydia trachomatis H27IMS organism-specific Integrated Microbial Genomes
2871956437: Chlamydia trachomatis sv. J SQ01 organism-specific Integrated Microbial Genomes
2869637281: Chlamydia trachomatis sv. LGV2 434Bu 383/384 IGR::Tn organism-specific Integrated Microbial Genomes
2728369407: Chlamydia trachomatis E-8873 organism-specific Integrated Microbial Genomes
2660238728: Chlamydia trachomatis R3059IMS organism-specific Integrated Microbial Genomes
2667527648: Chlamydia trachomatis R32100IMS organism-specific Integrated Microbial Genomes
2657245675: Chlamydia trachomatis R4175 organism-specific Integrated Microbial Genomes
2663763312: Chlamydia trachomatis 36176IM organism-specific Integrated Microbial Genomes
2667527513: Chlamydia trachomatis D/13-96 organism-specific Integrated Microbial Genomes
2671180600: Chlamydia trachomatis R27091IMS organism-specific Integrated Microbial Genomes
2660238245: Chlamydia trachomatis R3059 organism-specific Integrated Microbial Genomes
2660238314: Chlamydia trachomatis Ia/20-97 organism-specific Integrated Microbial Genomes
2684623114: Chlamydia trachomatis F/CS847/08 organism-specific Integrated Microbial Genomes
2663762960: Chlamydia trachomatis F/6-94 organism-specific Integrated Microbial Genomes
2684622561: Chlamydia trachomatis Swab6 organism-specific Integrated Microbial Genomes
2721755464: Chlamydia trachomatis E-32931 organism-specific Integrated Microbial Genomes
2663763454: Chlamydia trachomatis J/31-98 organism-specific Integrated Microbial Genomes
2663763275: Chlamydia trachomatis R28017 organism-specific Integrated Microbial Genomes
2657245148: Chlamydia trachomatis R32100 organism-specific Integrated Microbial Genomes
2690316001: Chlamydia trachomatis LGV913 organism-specific Integrated Microbial Genomes
2687453616: Chlamydia trachomatis Ia/CS190/96 organism-specific Integrated Microbial Genomes
2630968628: Chlamydia trachomatis L2b/CS19/08 organism-specific Integrated Microbial Genomes
2663763167: Chlamydia trachomatis HPA1 organism-specific Integrated Microbial Genomes
2667527515: Chlamydia trachomatis J/27-97 organism-specific Integrated Microbial Genomes
2657245410: Chlamydia trachomatis H34IMS organism-specific Integrated Microbial Genomes
2660238575: Chlamydia trachomatis H29IMS organism-specific Integrated Microbial Genomes
2871952629: Chlamydia trachomatis F/1-93 organism-specific Integrated Microbial Genomes
2700989226: Chlamydia trachomatis R4175IMS organism-specific Integrated Microbial Genomes
2859455321: Chlamydia trachomatis sv. Ia SQ12 organism-specific Integrated Microbial Genomes
2671180401: Chlamydia trachomatis SwabB1 organism-specific Integrated Microbial Genomes
2630968829: Chlamydia trachomatis L2b/CS784/08 organism-specific Integrated Microbial Genomes
2667527480: Chlamydia trachomatis F/2-93 organism-specific Integrated Microbial Genomes
2663762812: Chlamydia trachomatis 26833IM organism-specific Integrated Microbial Genomes
2657245620: Chlamydia trachomatis R33512IMS organism-specific Integrated Microbial Genomes
2660238678: Chlamydia trachomatis R36176 organism-specific Integrated Microbial Genomes
2660238515: Chlamydia trachomatis LGV98 organism-specific Integrated Microbial Genomes
2675903245: Chlamydia trachomatis SwabB8 organism-specific Integrated Microbial Genomes
2687453562: Chlamydia trachomatis E/CS1025/11 organism-specific Integrated Microbial Genomes
2675903535: Chlamydia trachomatis H21IMS organism-specific Integrated Microbial Genomes
2684622560: Chlamydia trachomatis Swab5 organism-specific Integrated Microbial Genomes
2663762910: Chlamydia trachomatis R26833 organism-specific Integrated Microbial Genomes
2667527681: Chlamydia trachomatis R27091 organism-specific Integrated Microbial Genomes
2667527465: Chlamydia trachomatis D/14-96 organism-specific Integrated Microbial Genomes
2690315894: Chlamydia trachomatis male 54 organism-specific Integrated Microbial Genomes
2660238138: Chlamydia trachomatis E/12-94 organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Chlamydia trachomatis (T) | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Chlamydia trachomatis type strain (SI-ID 404261) meta-databases StrainInfo, Leibniz Institute DSMZ
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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