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Taxonomy browser (Danio rerio)

Danio rerio

Taxonomy ID: 7955 (for references in articles please use NCBI:txid7955)
current name
Danio rerio (Hamilton, 1822)
Cyprinus rerio Hamilton, 1822
homotypic synonym:
Brachydanio rerio
Genbank common name: zebrafish
NCBI BLAST name: bony fishes
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 2 (Vertebrate Mitochondrial)
Other names:
heterotypic synonym
Brachydanio rerio frankei
heterotypic synonym
Danio frankei
heterotypic synonym
Danio rerio frankei
common name(s) leopard danio, zebra danio, zebra fish
Lineage( abbreviated )
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
   Entrez records   
Database name Direct links
Nucleotide 1,896,606
Protein 89,352
Structure 574
Genome 1
Popset 147
Conserved Domains 2
GEO Datasets 45,823
PubMed Central 26,803
Gene 100,236
HomoloGene 14,559
SRA Experiments 135,521
GEO Profiles 328,737
Protein Clusters 1
Identical Protein Groups 61,476
BioProject 3,276
BioSample 101,243
Assembly 26
PubChem BioAssay 2,075
Taxonomy 1

Comments and References:

image:Danio rerio

Genome Information

See the NCBI Genome homepage
Go to NCBI genomic BLAST page for Danio rerio

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
DNA barcoding : Danio rerio taxonomy/phylogenetic Barcodes of Life
46 records from this provider supplemental materials Dryad Digital Repository
4 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
639469800: Danio rerio Tuebingen organism-specific Integrated Microbial Genomes
Danio rerio (Hamilton, 1822) taxonomy/phylogenetic Integrated Taxonomic Information System
Danio rerio taxonomy/phylogenetic Lifemap
Zebrafish Model Organism Database taxonomy/phylogenetic NCBI taxonomy bookmarks
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Cyprinus rerio Hamilton, 1822 taxonomy/phylogenetic Ocean Biogeographic Information System
2 records from this provider taxonomy/phylogenetic Plazi
UCSCgb sequence screening/similarity/alignment UCSC Genome Browser
2 records from this provider organism-specific WebScipio - eukaryotic gene identification
4 records from this provider taxonomy/phylogenetic World Register of Marine Species
3 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Show organism modifiers

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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