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Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
   Entrez records   
Database name Direct links Subtree links Links from type
BioProject 13 13 -
BioSample 78 78 -
Gene 9,645 9,645 -
Identical Protein Groups 5,593 5,593 -
Nucleotide 69 69 -
PMC 4 4 -
Protein 9,567 9,567 -
SRA 367 367 -
Structure 1 1 -
Taxonomy 1 1 -

Herbaspirillum seropedicae SmR1

Taxonomy ID: 757424 (for references in articles please use ncbitaxon:757424)
current name
Herbaspirillum seropedicae SmR1
equivalent:
Herbaspirillum seropedicae strain SmR1
Herbaspirillum seropedicae str. SmR1
NCBI BLAST name: b-proteobacteria
Rank: no rank
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage(full)
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum; Herbaspirillum seropedicae

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.
Monteiro RA et al. (2012)
Monteiro, R.A., Balsanelli, E., Tuleski, T., Faoro, H., Cruz, L.M., Wassem, R., de Baura, V.A., Tadra-Sfeir, M.Z., Weiss, V., DaRocha, W.D., Muller-Santos, M., Chubatsu, L.S., Huergo, L.F., Pedrosa, F.O., and de Souza, E.M. "Genomic comparison of the endophyte Herbaspirillum seropedicae SmR1 and the phytopathogen Herbaspirillum rubrisubalbicans M1 by suppressive subtractive hybridization and partial genome sequencing." FEMS Microbiol. Ecol. (2012) 80:441-451.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Herbaspirillum seropedicae type strain (BD-ID 11353) meta-databases BacDive
Herbaspirillum seropedicae SmR1 organism-specific BioCyc
Herbaspirillum seropedicae SmR1 organism-specific BioCyc
Herbaspirillum seropedicae SmR1 organism-specific BioCyc
GOLD: Go0007583 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
648028033: Herbaspirillum seropedicae SmR1 organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Herbaspirillum seropedicae type strain (SI-ID 3005) meta-databases StrainInfo, Leibniz Institute DSMZ
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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