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Taxonomy browser (Ixodes scapularis)

Ixodes scapularis

Taxonomy ID: 6945 (for references in articles please use NCBI:txid6945)
Scientific name: Ixodes scapularis Say, 1821
Genbank common name: black-legged tick
Inherited blast name: mites & ticks
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 5 (Invertebrate Mitochondrial)
Other names:
synonym: Ixodes dammini
common name: blacklegged tick
common name: deer tick
common name: shoulder tick
Lineage( abbreviated )
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes
   Entrez records   
Database name Direct links
Nucleotide 797,369
Nucleotide EST 193,773
Nucleotide GSS 66
Protein 42,185
Structure 8
Genome 1
Popset 38
Conserved Domains 1
GEO Datasets 32
UniGene 19,405
PubMed Central 2,694
Gene 24,803
SRA Experiments 451
Bio Project 42
Bio Sample 342
Bio Systems 227
Assembly 2
Clone DB 184,319
Probe 55
Taxonomy 1

Genome Information

Go to NCBI genomic BLAST page for Ixodes scapularis
See the TRACE Assembly
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CLONEEND OTHER PCR PRIMERWALK SHOTGUN TRANSPOSON WGS ALL
BI - Broad Insititute
201,600 1,354 644 188 75,262 34,304 10,707,500 11,020,852
JCVI - J. Craig Venter Institute
367,715 - - 1,109 34,785 82 8,032,665 8,436,356
Totals per type
569,315 1,354 644 1,297 110,047 34,386 18,740,165 19,457,208

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Ixodes scapularis taxonomy taxonomy/phylogenetic Arctos Specimen Database
dryaddb supplemental materials Dryad Digital Repository
Ixodes scapularis Say 1821 taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0003005 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
2507525030: Ixodes scapularis Wikel organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
2 records from this provider organism-specific WebScipio - eukaryotic gene identification
3 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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