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Taxonomy browser (Vibrio cholerae)

Vibrio cholerae

Taxonomy ID: 666 (for references in articles please use NCBI:txid666)
current name
Vibrio cholerae Pacini 1854
type strain of Vibrio cholerae: ATCC:14035, CCUG:9118 A, CECT:514, CIP:62.13, NCTC:8021
homotypic synonym:
"Vibrio cholera" (sic) Pacini 1854, effective name 1)
"Bacillus cholerae" (Pacini 1854) Trevisan 1884, effective name 1)
"Spirillum cholerae" (Pacini 1854) Mac1889, effective name 1)
"Liquidivibrio cholerae" (Pacini 1854) Orla-Jensen 1909, effective name 1)
NCBI BLAST name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Host: bacteria
Other names:
heterotypic synonym
"Bacillo virgola del Koch" Trevisan 1884, effective name 1)
heterotypic synonym
"Bacillus cholerae-asiaticae" Trevisan 1884, effective name 1)
heterotypic synonym
"Kommabacillus" Koch 1884, effective name 1)
heterotypic synonym
"Pacinia cholerae-asiaticae" (Trevisan 1884) Trevisan 1885, effective name 1)
heterotypic synonym
"Spirillum cholerae-asiaticae" (Trevisan 1884) Zopf 1885, effective name 1)
heterotypic synonym
"Vibrio cholerae-asiaticae" (Trevisan 1884) Pfeiffer 1896, effective name 1)
heterotypic synonym
"Vibrio comma" (Schroeter 1886) Blanchard 1906, effective name 1)
homotypic synonym:
"Microspira comma" Schroeter 1886, effective name 1)
heterotypic synonym
Vibrio cholerae biovar albensis
heterotypic synonym
Vibrio cholerae bv. albensis
heterotypic synonym
Vibrio albensis Lehmann and Neumann 1896
type strain of Vibrio albensis: ATCC:14547, CCUG:48664, BCCM/LMG:4406, NCIMB:41
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 347,841 251,381 173
Protein 3,997,164 3,247,794 -
Structure 608 293 -
Genome 1 1 -
Popset 325 310 -
Conserved Domains 6 3 -
GEO Datasets 1,111 983 -
PubMed Central 19,357 19,357 -
Gene 47,233 404 -
SRA Experiments 9,819 7,984 -
Protein Clusters 5,560 5,560 -
Identical Protein Groups 510,591 486,221 -
Bio Project 805 514 -
Bio Sample 10,910 9,229 8
Bio Systems 3,557 1,086 -
Assembly 1,661 1,207 4
Probe 251 229 -
PubChem BioAssay 286 264 -
Taxonomy 286 1 -

Notes:

Comments and References:

Hendrie MS et al. (1970)
Hendrie, M.S., Hodgkiss, W., and Shewan, J.M. "The identification, taxonomy and classification of luminous bacteria." J. Gen. Microbiol. (1970) 64:151-169. [No PubMed record available.]
Lehmann KB & Neumann R (1896)
Lehman, K.B., and Neumann, R. Atlas und Grundriss der Bakeriologie und Lehrbuch der speziellen bakteriologischen Diagnositk. 1st Ed., (1896) J.F. Lehmann, Munchen. [No PubMed record available.]
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Reichelt JL et al. (1976)
Reichelt, J.L., Baumann, P., and Baumann, L. "Study of genetic relationships among marine species of the genera Beneckea and Photobacterium by means of in vitro DNA/DNA hybridization." Arch. Microbiol. (1976) 110:101-120.
Nandi S et al. (1997)
Nandi, S., Khetawat, G., Sengupta, S., Majumder, R., Kar, S., Bhadra, R.K., Roychoudhury, S., and Das, J. "Rearrangements in the genomes of Vibrio cholerae strains belonging to different serovars and biovars." Int. J. Syst. Bacteriol. (1997) 47:858-862.
Lapage SP et al. (1992) (reference with type strain information)
Lapage, S.P., Sneath, P.H.A., Lessel, E.F., Skerman, V.B.D., Seeliger, H.P.R., and Clark, W.A. "International Code of Nomenclature of Bacteria (1990 revision)." American Society for Microbiology, Washington, D.C. (1992). [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Vibrio cholerae meta-databases BacDive
15 records from this provider organism-specific BioCyc
2 records from this provider supplemental materials Dryad Digital Repository
Vibrio cholerae Pacini 1854 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
41 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Vibrio cholerae culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
242 records from this provider organism-specific Integrated Microbial Genomes
Vibrio cholerae taxonomy/phylogenetic Lifemap
4 records from this provider taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Vibrio cholerae taxonomy/phylogenetic TreeBase
Vibrio cholerae Pacini, 1854 taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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