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Taxonomy browser (Vibrio)


Taxonomy ID: 662 (for references in articles please use NCBI:txid662)
current name
Vibrio Pacini 1854
NCBI BLAST name: g-proteobacteria
Rank: genus
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Pacinia" Trevisan 1885, effective name 1)
heterotypic synonym
"Microspira" Schroeter 1886, effective name 2)
heterotypic synonym
Beneckea Campbell 1957
heterotypic synonym
Listonella MacDonell and Colwell 1986
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 2,740,187 16
Protein 24,288,252 425,935
Structure 1,197 1
Genome 164 1
Popset 2,051 1,229
Conserved Domains 23 11
GEO Datasets 2,585 -
PubMed Central 50,390 50,315
Gene 564,286 -
SRA Experiments 32,514 189
Protein Clusters 21,974 9,691
Identical Protein Groups 8,597,498 425,306
BioProject 3,536 67
BioSample 52,329 180
Assembly 29,289 -
Genetic Testing Registry 2 2
PubChem BioAssay 831 4
Taxonomy 14,545 1


Comments and References:

Vibrio (LPSN link)
Beneckea (LPSN link)
Listonella (LPSN link)
Baumann P et al. (1971)
Baumann, P., Baumann, L., and Mandel, M. "Taxonomy of marine bacteria: the genus Beneckea." J. Bacteriol. (1971) 107:268-294.
Baumann P et al. (1980)
Baumann, P., Baumann, L., Bang, S.S., and Woolkalis, M.J. "Reevaluation of the taxonomy of Vibrio, Beneckea, and Photobacterium: abolition of the genus Beneckea." Curr. Microbiol. (1980) 4:127-132. [No PubMed record available.]
Dorsch M et al. (1992)
Dorsch, M., Lane, D., and Stackebrandt, E. "Towards a phylogeny of the genus Vibrio based on 16S rRNA sequences." Int. J. Syst. Bacteriol. (1992) 42:58-63.
ICSB Subcommittee on the Taxonomy of Vibrionaceae (1998)
ICSB, Subcommittee on the Taxonomy of Vibrionaceae "Minutes of the meetings (Minute 8), 4 and 7 July 1994, Prague, Czech republic." Int. J. Syst. Bacteriol. (1998) 48:1467-1469. (Note: the genus Listonella is not well-defined and requires redfefinition.)
MacDonell MT & Colwell RR (1985)
MacDonell, M.T., and Colwell, R.R. "Phylogeny of the Vibrionaceae, and recommendation for two new genera, Listonella and Shewanella." Syst. Appl. Microbiol. (1985) 6(2):171-182.
Moreira APB et al. (2011)
Moreira, A.P.B., Pereira, N. Jr., and Thompson, F.L. "Usefulness of a real-time PCR platform for G+C content and DNA-DNA hybridization estimations in vibrios." Int. J. Syst. Evol. Microbiol. (2011) 61:2379-2383.
Ruimy R et al. (1994)
Ruimy, R., Breittmayer, V., Elbaze, P., Lafay, B., Boussemart, O., Gauthier, M., Christen, R. "Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences." Int. J. Syst. Bacteriol. (1994) 44:416-426.
Sawabe T et al. (2013)
Sawabe, T., Ogura, Y., Matsumura, Y., Gao, F., Amin, A.R., Mino, S., Nakagawa, S., Sawabe, T., Kumar, R., Fukui, Y., Satomi, M., Matsushima, R., Thompson, F.L., Bruno, G.G., Christen, R., Maruyama, F., Kurokawa, K., and Hayashi, T. "Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp. nov." Front. Microbiol. (2013) 4:414. [Corrigendum: Front. Microbiol. (2014) 5:583 (PMID 25406895)]
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Skerman VBD et al. (1980) (Beneckea)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.
Thompson CC et al. (2007)
Thompson, C.C., Thompson, F.L., Vicente, A.C., and Swings, J. "Phylogenetic analysis of vibrios and related species by means of atpA gene sequences." Int. J. Syst. Evol. Microbiol. (2007) 57:2480-2484.
Thompson FL et al. (2011)
Thompson, F.L., Thompson, C.C., Dias, G.M., Naka, H., Dubay, C., and Crosa, J.H. "The genus Listonella MacDonell and Colwell 1986 is a later heterotypic synonym of the genus Vibrio Pacini 1854 (Approved Lists 1980)--a taxonomic opinion." Int. J. Syst. Evol. Microbiol. (2011) 61:3023-3027.
VALIDATION LIST No. 6 (1981) (Beneckea -> Vibrio)
VALIDATION LIST No. 6. Int. J. Syst. Bacteriol. (1981) 31:215-218.
VALIDATION LIST No. 20 (1986) (Listonella)
VALIDATION LIST No. 20. Int. J. Syst. Bacteriol. (1986) 36:354-356.
Wiik R et al. (1995)
Wiik, R., Stackebrandt, E., Valle, O., Daae, F.L., Rodseth, O.M., and Andersen, K. "Classification of fish-pathogenic vibrios based on comparative 16S rRNA analysis." Int. J. Syst. Bacteriol. (1995) 45:421-428.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Beneckea taxonomy/phylogenetic Encyclopedia of life
2 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Vibrio culture/stock collections Global Catalogue of Microorganisms
8 records from this provider organism-specific Integrated Microbial Genomes
Vibrio taxonomy/phylogenetic Integrated Taxonomic Information System
Vibrio taxonomy/phylogenetic Lifemap
LBSN taxonomy/phylogenetic List of Bacterial names with Standing in Nomenclature
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
2 records from this provider taxonomy/phylogenetic Ocean Biogeographic Information System
2 records from this provider taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
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A list of our current non-bibliographic LinkOut providers can be found here.

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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