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Taxonomy browser (Vibrio)

Vibrio

Taxonomy ID: 662 (for references in articles please use NCBI:txid662)
current name
Vibrio Pacini 1854
NCBI BLAST name: g-proteobacteria
Rank: genus
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Pacinia" Trevisan 1885, effective name 1)
heterotypic synonym
"Microspira" Schroeter 1886, effective name 1)
heterotypic synonym
Beneckea Campbell 1957
heterotypic synonym
Listonella MacDonell and Colwell 1986
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 1,515,878 16
Protein 17,188,903 185,079
Structure 928 1
Genome 123 1
Popset 1,938 1,193
Conserved Domains 22 14
GEO Datasets 1,790 -
PubMed Central 33,445 33,381
Gene 307,102 -
SRA Experiments 13,429 24
Protein Clusters 21,974 9,691
Identical Protein Groups 3,917,855 185,067
Bio Project 2,141 28
Bio Sample 16,872 24
Bio Systems 11,142 -
Assembly 4,866 -
Probe 755 96
PubChem BioAssay 659 4
Taxonomy 14,038 1

Notes:

Comments and References:

Vibrio (LPSN link)
Beneckea (LPSN link)
Listonella (LPSN link)
Baumann P et al. (1971)
Baumann, P., Baumann, L., and Mandel, M. "Taxonomy of marine bacteria: the genus Beneckea." J. Bacteriol. (1971) 107:268-294.
Baumann P et al. (1980)
Baumann, P., Baumann, L., Bang, S.S., and Woolkalis, M.J. "Reevaluation of the taxonomy of Vibrio, Beneckea, and Photobacterium: abolition of the genus Beneckea." Curr. Microbiol. (1980) 4:127-132. [No PubMed record available.]
Dorsch M et al. (1992)
Dorsch, M., Lane, D., and Stackebrandt, E. "Towards a phylogeny of the genus Vibrio based on 16S rRNA sequences." Int. J. Syst. Bacteriol. (1992) 42:58-63.
ICSB Subcommittee on the Taxonomy of Vibrionaceae (1998)
ICSB, Subcommittee on the Taxonomy of Vibrionaceae "Minutes of the meetings (Minute 8), 4 and 7 July 1994, Prague, Czech republic." Int. J. Syst. Bacteriol. (1998) 48:1467-1469. (Note: the genus Listonella is not well-defined and requires redfefinition.)
MacDonell MT & Colwell RR (1985)
MacDonell, M.T., and Colwell, R.R. "Phylogeny of the Vibrionaceae, and recommendation for two new genera, Listonella and Shewanella." Syst. Appl. Microbiol. (1985) 6:171-182. [No PubMed record available.]
Moreira APB et al. (2011)
Moreira, A.P.B., Pereira, N. Jr., and Thompson, F.L. "Usefulness of a real-time PCR platform for G+C content and DNA-DNA hybridization estimations in vibrios." Int. J. Syst. Evol. Microbiol. (2011) 61:2379-2383.
Ruimy R et al. (1994)
Ruimy, R., Breittmayer, V., Elbaze, P., Lafay, B., Boussemart, O., Gauthier, M., Christen, R. "Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences." Int. J. Syst. Bacteriol. (1994) 44:416-426.
Sawabe T et al. (2013)
Sawabe, T., Ogura, Y., Matsumura, Y., Gao, F., Amin, A.R., Mino, S., Nakagawa, S., Sawabe, T., Kumar, R., Fukui, Y., Satomi, M., Matsushima, R., Thompson, F.L., Bruno, G.G., Christen, R., Maruyama, F., Kurokawa, K., and Hayashi, T. "Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp. nov." Front. Microbiol. (2013) 4:414. [Corrigendum: Front. Microbiol. (2014) 5:583 (PMID 25406895)]
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Skerman VBD et al. (1980) (Beneckea)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.
Thompson CC et al. (2007)
Thompson, C.C., Thompson, F.L., Vicente, A.C., and Swings, J. "Phylogenetic analysis of vibrios and related species by means of atpA gene sequences." Int. J. Syst. Evol. Microbiol. (2007) 57:2480-2484.
Thompson FL et al. (2011)
Thompson, F.L., Thompson, C.C., Dias, G.M., Naka, H., Dubay, C., and Crosa, J.H. "The genus Listonella MacDonell and Colwell 1986 is a later heterotypic synonym of the genus Vibrio Pacini 1854 (Approved Lists 1980)--a taxonomic opinion." Int. J. Syst. Evol. Microbiol. (2011) 61:3023-3027.
VALIDATION LIST No. 6 (1981) (Beneckea -> Vibrio)
VALIDATION LIST No. 6. Int. J. Syst. Bacteriol. (1981) 31:215-218.
VALIDATION LIST No. 20 (1986) (Listonella)
VALIDATION LIST No. 20. Int. J. Syst. Bacteriol. (1986) 36:354-356.
Wiik R et al. (1995)
Wiik, R., Stackebrandt, E., Valle, O., Daae, F.L., Rodseth, O.M., and Andersen, K. "Classification of fish-pathogenic vibrios based on comparative 16S rRNA analysis." Int. J. Syst. Bacteriol. (1995) 45:421-428.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Beneckea taxonomy/phylogenetic Encyclopedia of life
2 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Vibrio culture/stock collections Global Catalogue of Microorganisms
3 records from this provider organism-specific Integrated Microbial Genomes
Vibrio taxonomy/phylogenetic Integrated Taxonomic Information System
Vibrio taxonomy/phylogenetic Lifemap
LBSN taxonomy/phylogenetic List of Bacterial names with Standing in Nomenclature
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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