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Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
   Entrez records   
Database name Direct links Subtree links Links from type
BioProject 82 4,181 -
BioSample 394 170,165 -
Conserved Domains 11 23 -
GEO DataSets - 3,191 -
Gene - 660,193 -
GTR - 1 -
Identical Protein Groups 533,903 10,774,340 -
Nucleotide 18 2,990,996 45,497
PubChem BioAssay 4 986 -
PMC 51,816 51,885 -
Protein 537,491 27,151,737 -
SRA 362 45,410 -
Structure 1 1,345 -
Taxonomy 14,908 14,908 -

Vibrio

Taxonomy ID: 662 (for references in articles please use ncbitaxon:662)
current name
Vibrio  Pacini 1854
NCBI BLAST name: g-proteobacteria
Rank: genus
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym "Pacinia"  Trevisan 1885 , effective name  1)
heterotypic synonym "Microspira"  Schroeter 1886 , effective name  2)
heterotypic synonym Beneckea  Campbell 1957
heterotypic synonym Listonella  MacDonell and Colwell 1986
Lineage(full)
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae

Notes:

Comments and References:

Vibrio (LPSN link)
Beneckea (LPSN link)
Listonella (LPSN link)
Baumann P et al. (1971)
Baumann, P., Baumann, L., and Mandel, M. "Taxonomy of marine bacteria: the genus Beneckea." J. Bacteriol. (1971) 107:268-294.
Baumann P et al. (1980)
Baumann, P., Baumann, L., Bang, S.S., and Woolkalis, M.J. "Reevaluation of the taxonomy of Vibrio, Beneckea, and Photobacterium: abolition of the genus Beneckea." Curr. Microbiol. (1980) 4:127-132. [No PubMed record available.]
Dorsch M et al. (1992)
Dorsch, M., Lane, D., and Stackebrandt, E. "Towards a phylogeny of the genus Vibrio based on 16S rRNA sequences." Int. J. Syst. Bacteriol. (1992) 42:58-63.
ICSB Subcommittee on the Taxonomy of Vibrionaceae (1998)
ICSB, Subcommittee on the Taxonomy of Vibrionaceae "Minutes of the meetings (Minute 8), 4 and 7 July 1994, Prague, Czech republic." Int. J. Syst. Bacteriol. (1998) 48:1467-1469. (Note: the genus Listonella is not well-defined and requires redfefinition.)
MacDonell MT & Colwell RR (1985)
MacDonell, M.T., and Colwell, R.R. "Phylogeny of the Vibrionaceae, and recommendation for two new genera, Listonella and Shewanella." Syst. Appl. Microbiol. (1985) 6(2):171-182.
Moreira APB et al. (2011)
Moreira, A.P.B., Pereira, N. Jr., and Thompson, F.L. "Usefulness of a real-time PCR platform for G+C content and DNA-DNA hybridization estimations in vibrios." Int. J. Syst. Evol. Microbiol. (2011) 61:2379-2383.
Ruimy R et al. (1994)
Ruimy, R., Breittmayer, V., Elbaze, P., Lafay, B., Boussemart, O., Gauthier, M., Christen, R. "Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences." Int. J. Syst. Bacteriol. (1994) 44(3):416-426.
Sawabe T et al. (2013)
Sawabe, T., Ogura, Y., Matsumura, Y., Gao, F., Amin, A.R., Mino, S., Nakagawa, S., Sawabe, T., Kumar, R., Fukui, Y., Satomi, M., Matsushima, R., Thompson, F.L., Bruno, G.G., Christen, R., Maruyama, F., Kurokawa, K., and Hayashi, T. "Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp. nov." Front. Microbiol. (2013) 4:414. [Corrigendum: Front. Microbiol. (2014) 5:583 (PMID 25406895)]
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30(1):225-420. [No PubMed record available.]
Skerman VBD et al. (1980) (Beneckea)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.
Thompson CC et al. (2007)
Thompson, C.C., Thompson, F.L., Vicente, A.C., and Swings, J. "Phylogenetic analysis of vibrios and related species by means of atpA gene sequences." Int. J. Syst. Evol. Microbiol. (2007) 57:2480-2484.
Thompson FL et al. (2011)
Thompson, F.L., Thompson, C.C., Dias, G.M., Naka, H., Dubay, C., and Crosa, J.H. "The genus Listonella MacDonell and Colwell 1986 is a later heterotypic synonym of the genus Vibrio Pacini 1854 (Approved Lists 1980)--a taxonomic opinion." Int. J. Syst. Evol. Microbiol. (2011) 61:3023-3027.
VALIDATION LIST No. 6 (1981) (Beneckea -> Vibrio)
VALIDATION LIST No. 6. Int. J. Syst. Bacteriol. (1981) 31:215-218.
VALIDATION LIST No. 20 (1986) (Listonella)
VALIDATION LIST No. 20. Int. J. Syst. Bacteriol. (1986) 36:354-356.
Wiik R et al. (1995)
Wiik, R., Stackebrandt, E., Valle, O., Daae, F.L., Rodseth, O.M., and Andersen, K. "Classification of fish-pathogenic vibrios based on comparative 16S rRNA analysis." Int. J. Syst. Bacteriol. (1995) 45:421-428.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Vibrio taxonomy taxonomy/phylogenetic Arctos Specimen Database
Beneckea taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0036117 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Vibrio culture/stock collections Global Catalogue of Microorganisms
2778260957: Vibrio sp. OfT6-21 organism-specific Integrated Microbial Genomes
2778260958: Vibrio sp. OfT7-21 organism-specific Integrated Microbial Genomes
2824009989: Vibrio sp. 20LP organism-specific Integrated Microbial Genomes
2710724141: Vibrio sp. SUR-5 organism-specific Integrated Microbial Genomes
2703719079: Vibrio sp. ZOR0036 organism-specific Integrated Microbial Genomes
2824005034: Vibrio sp. 18LP organism-specific Integrated Microbial Genomes
2778260956: Vibrio sp. OfT6-17 organism-specific Integrated Microbial Genomes
2627853569: Guam_bin5_Vibrio organism-specific Integrated Microbial Genomes
Vibrio taxonomy/phylogenetic Integrated Taxonomic Information System
Vibrio taxonomy/phylogenetic Lifemap
LBSN taxonomy/phylogenetic List of Bacterial names with Standing in Nomenclature
Listonella MacDonell & Colwell, 1985 taxonomy/phylogenetic Ocean Biogeographic Information System
Beneckea Campbell, 1957 taxonomy/phylogenetic Ocean Biogeographic Information System
Vibrio | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Beneckea Campbell, 1957 taxonomy/phylogenetic World Register of Marine Species
Microspira Conrad, 1868 taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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