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Taxonomy browser (Yersinia pestis)

Yersinia pestis

Taxonomy ID: 632 (for references in articles please use NCBI:txid632)
Scientific name: Yersinia pestis (Lehmann and Neumann 1896) van Loghem 1944 (Approved Lists 1980), nom. cons., nom. approb., nom. cons. 1),2)
type strain of Yersinia pestis: ATCC:19428
type strain of Yersinia pestis: CIP:80.26
type strain of Yersinia pestis: NCTC:5923
homotypic synonym: "Bacterium pestis" Lehmann and Neumann 1896, effective name 3)
homotypic synonym: "Bacillus pestis" (Lehmann and Neumann 1896) Migula 1900, effective name 3)
homotypic synonym: "Pasteurella pestis" (Lehmann and Neumann 1896) Bergey et al. 1923, effective name 3)
homotypic synonym: "Pestisella pestis" (Lehmann and Neumann 1896) Dorofeev 1947, effective name 3)
homotypic synonym: Yersinia pseudotuberculosis subsp. pestis (Lehmann and Neumann 1896) Bercovier et al. 1981
Inherited blast name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia; Yersinia pseudotuberculosis complex
   Entrez records   
Database name Subtree links Direct links
Nucleotide 407,590 36,940
Protein 1,017,363 329,142
Structure 255 173
Genome 1 1
Popset 55 49
Conserved Domains 9 9
GEO Datasets 562 549
PubMed Central 7,195 7,195
Gene 52,286 419
SRA Experiments 633 437
GEO Profiles 31,440 31,440
Protein Clusters 2,330 2,330
Identical Protein Groups 79,827 53,972
Bio Project 276 130
Bio Sample 1,429 1,015
Bio Systems 4,594 1,171
Assembly 385 85
Probe 289 210
PubChem BioAssay 216 87
Taxonomy 281 1

Notes:

Comments and References:

Reference to PubMed documentAnsimov AP et al. (2004)
Anisimov, A.P., Lindler, L.E., and Pier, G.B. "Intraspecific diversity of Yersinia pestis." Clin. Microbiol. Rev. (2004) 17:434-464. [Erratum: Clin. Microbiol. Rev. (2004) 17:695.]

Bercovier H et al. (1980b)
Bercovier, H., Mollaret, H.H., Alonso, J.M., Brault, J., Fanning, G.R., Steigerwalt, A.G., and Brenner, D.J. "Intra- and interspecies relatedness of Yersinia pestis by DNA hybridization and its relationship to Yersinia pseudotuberculosis." Curr. Microbiol. (1980) 4:225-229. [No PubMed record available.]

Bergey DH et al. (1923)
Bergey, D.H., Harrison, F.C., Breed, R.S., Hammer B.W., and Huntoon, F.M. Bergey's Manual of Determinative Bacteriology, 1st ed. (1923) The Williams and Wilkins Co., Baltimore, pp. 1-442. [No PubMed record available.]

Dorofeev KA (1947)
Dorofeev (Dorofe'ev), K.A. "Classification of the causative agent of tularemia." Symp. Res. Works Inst. Epidemiol. Mikrobiol. (Chita)." (Russ.) 1:170-180. [No PubMed record available.]

Nota BeneJUDICIAL OPINION 60 (1985)
JUDICIAL OPINION 60: Rejection of the name Yersinia pseudotuberculosis subsp. pestis (van Loghem) Bercovier et al. 1981 and conservation of the name Yersinia pestis (Lehmann and Neumann) van Loghem 1944 for the plague bacillus." Int. J. Syst. Bacteriol. (1985) 35:540. [No PubMed record available.]

Lehmann KB & Neumann R (1896)
Lehman, K.B., and Neumann, R. Atlas und Grundriss der Bakeriologie und Lehrbuch der speziellen bakteriologischen Diagnositk. 1st Ed., (1896) J.F. Lehmann, Munchen. [No PubMed record available.]

Migula W (1900)
Migula, W. System der Bakterien, Vol. 2. (1900) Gustav Fischer, Jena. [No PubMed record available.]

Nota BeneSkerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

VALIDATION LIST No. 7 (Yersinia pseudotuberculosis subsp. pestis)
VALIDATION LIST No. 7. Int. J. Syst. Bacteriol. (1981) 31:382-383.

van Loghem JJ (1944)
van Loghem, J.J. "The classification of plague bacillus." Antonie van Leeuwenhoek J. Serol. Microbiol. (1944) 10:15-16. [No PubMed record available.]

Nota BeneWayne LG (1986)
Wayne, L.G. "Actions of the Judicial Commission of the International Committee on Systematic Bacteriology on requests for opinions published in1983 and 1984." Int. J. Syst. Bacteriol. (1986) 36:357-358. [No PubMed record available.]

Nota BeneWilliams JE (1984)
Williams, J.E. "Proposal to reject the new combination Yersinia pseudotuberculosis subsp. pestis for violation of the first principle of the International Code of Nomenclature of Bacteria. Request for an opinion." Int. J. Syst. Bacteriol. (1984) 34:268-269. [No PubMed record available.]


External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Yersinia pestisCadman organism-specific BioCyc
Yersinia pestis (Lehmann and Neumann 1896) van Loghem 1944 (Approved Lists 1980). taxonomy/phylogenetic Encyclopedia of life
37 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
25 records from this provider organism-specific Integrated Microbial Genomes
Yersinia pestis (taxon passport) culture/stock collections StrainInfo
Sanger companies/research institutes The Sanger Centre
Yersinia pestis taxonomy/phylogenetic TreeBase
Wikipedia taxonomy/phylogenetic iPhylo
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