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Taxonomy browser (Shigella flexneri)

Shigella flexneri

Taxonomy ID: 623 (for references in articles please use NCBI:txid623)
current name
Shigella flexneri Castellani and Chalmers 1919
type strain of Shigella flexneri: ATCC:29903, CIP:82.48, DSM:4782, KCTC:22192, WDCM:00125, personal::24570
Escherichia flexneri
Escherichia/Shigella flexneri
NCBI BLAST name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Shigella paradysenteriae" Weldin 1927, effective name 1)
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 496,663 376,825 676
Protein 2,134,468 1,722,658 -
Structure 206 156 -
Genome 1 1 -
Popset 181 181 -
Conserved Domains 3 2 -
GEO Datasets 248 199 -
PubMed Central 11,601 11,601 -
Gene 29,120 1,360 -
SRA Experiments 20,922 20,028 -
Protein Clusters 3,064 3,064 -
Identical Protein Groups 646,873 616,317 -
BioProject 238 156 -
BioSample 21,503 20,300 5
Assembly 15,708 15,278 -
PubChem BioAssay 205 205 -
Taxonomy 114 1 -


Comments and References:

Castellani A & Chalmers AJ (1919)
Castellani, A., and Chalmers, A.J. Manual of Tropical Medicine, 3rd ed. (1919). Williams Wood and Co., New York. [No PubMed abstract available.]
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Weldin JC (1927)
Weldin, J.C. "The colon-typhoid group of bacteria and related forms. Relationships and classification. " Iowa State J. Sci. (1927) 1:121-197. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Shigella flexneri meta-databases BacDive
32 records from this provider organism-specific BioCyc
Shigella flexneri Castellani and Chalmers 1919 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
7 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Shigella flexneri culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
103 records from this provider organism-specific Integrated Microbial Genomes
Shigella flexneri taxonomy/phylogenetic Lifemap
2 records from provider taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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