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Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
   Entrez records   
Database name Direct links Subtree links Links from type
BioProject 201 284 -
BioSample 28,691 30,115 -
Conserved Domains 2 3 -
GEO DataSets 350 400 -
Gene 1,360 29,120 -
Identical Protein Groups 840,451 873,210 -
Nucleotide 467,368 587,372 676
PubChem BioAssay 211 211 -
PMC 11,938 11,938 -
Protein 1,901,632 2,320,613 -
SRA 27,369 28,484 -
Structure 163 217 -
Taxonomy 114 114 -

Shigella flexneri

Taxonomy ID: 623 (for references in articles please use NCBI:txid623)
current name
Shigella flexneri  Castellani and Chalmers 1919
type strain of Shigella flexneri: ATCC : 29903 , CIP : 82.48 , DSM : 4782 , KCTC : 22192 , WDCM : 00125 , personal : 24570
equivalent:
Escherichia/Shigella flexneri
Escherichia flexneri
NCBI BLAST name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym "Shigella paradysenteriae"  Weldin 1927 , effective name  1)
Lineage(full)
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella

Notes:

Comments and References:

Castellani A & Chalmers AJ (1919)
Castellani, A., and Chalmers, A.J. Manual of Tropical Medicine, 3rd ed. (1919). Williams Wood and Co., New York. [No PubMed abstract available.]
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30(1):225-420. [No PubMed record available.]
Weldin JC (1927)
Weldin, J.C. "The colon-typhoid group of bacteria and related forms. Relationships and classification. " Iowa State J. Sci. (1927) 1:121-197. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Shigella flexneri type strain (BD-ID 5171) meta-databases BacDive
Shigella flexneri AUSMDU00008355 organism-specific BioCyc
Shigella flexneri SFL1520 organism-specific BioCyc
Shigella flexneri NCTC 9728 organism-specific BioCyc
Shigella flexneri Pan-Genome organism-specific BioCyc
Shigella flexneri 74-1170 organism-specific BioCyc
Shigella flexneri 98-3193 organism-specific BioCyc
Shigella flexneri FDAARGOS_535 organism-specific BioCyc
Shigella flexneri FC906 organism-specific BioCyc
Shigella flexneri AUSMDU00008332 organism-specific BioCyc
Shigella flexneri 04-3145 organism-specific BioCyc
Shigella flexneri 61-4982 organism-specific BioCyc
Shigella flexneri 64-5500 organism-specific BioCyc
Shigella flexneri FDAARGOS_74 organism-specific BioCyc
Shigella flexneri 2016AM-0877 organism-specific BioCyc
Shigella flexneri genome assembly NCTC1 organism-specific BioCyc
Shigella flexneri 98-3193 organism-specific BioCyc
Shigella flexneri 89-141 organism-specific BioCyc
Shigella flexneri SFL1520 organism-specific BioCyc
Shigella flexneri FDAARGOS_535 organism-specific BioCyc
Shigella flexneri AUSMDU00008355 organism-specific BioCyc
Shigella flexneri 04-3145 organism-specific BioCyc
Shigella flexneri 61-4982 organism-specific BioCyc
Shigella flexneri AUSMDU00008332 organism-specific BioCyc
Shigella flexneri 89-141 organism-specific BioCyc
Shigella flexneri 2016AM-0877 organism-specific BioCyc
Shigella flexneri NCTC 9728 organism-specific BioCyc
Shigella flexneri FC906 organism-specific BioCyc
Shigella flexneri Pan-Genome organism-specific BioCyc
Shigella flexneri FDAARGOS_74 organism-specific BioCyc
Shigella flexneri genome assembly NCTC1 organism-specific BioCyc
Shigella flexneri 74-1170 organism-specific BioCyc
Shigella flexneri 64-5500 organism-specific BioCyc
Shigella flexneri AUSMDU00008332 organism-specific BioCyc
Shigella flexneri 74-1170 organism-specific BioCyc
Shigella flexneri FC906 organism-specific BioCyc
Shigella flexneri NCTC 9728 organism-specific BioCyc
Shigella flexneri Pan-Genome organism-specific BioCyc
Shigella flexneri 98-3193 organism-specific BioCyc
Shigella flexneri FDAARGOS_535 organism-specific BioCyc
Shigella flexneri 89-141 organism-specific BioCyc
Shigella flexneri SFL1520 organism-specific BioCyc
Shigella flexneri SFL1520 organism-specific BioCyc
Shigella flexneri AUSMDU00008355 organism-specific BioCyc
Shigella flexneri 2016AM-0877 organism-specific BioCyc
Shigella flexneri 64-5500 organism-specific BioCyc
Shigella flexneri AUSMDU00008355 organism-specific BioCyc
Shigella flexneri 61-4982 organism-specific BioCyc
Shigella flexneri 04-3145 organism-specific BioCyc
Shigella flexneri FDAARGOS_74 organism-specific BioCyc
Shigella flexneri 89-141 organism-specific BioCyc
Shigella flexneri Pan-Genome organism-specific BioCyc
Shigella flexneri 61-4982 organism-specific BioCyc
Shigella flexneri FDAARGOS_74 organism-specific BioCyc
Shigella flexneri 2016AM-0877 organism-specific BioCyc
Shigella flexneri FC906 organism-specific BioCyc
Shigella flexneri FDAARGOS_535 organism-specific BioCyc
Shigella flexneri 74-1170 organism-specific BioCyc
Shigella flexneri AUSMDU00008332 organism-specific BioCyc
Shigella flexneri genome assembly NCTC1 organism-specific BioCyc
Shigella flexneri 04-3145 organism-specific BioCyc
Shigella flexneri NCTC 9728 organism-specific BioCyc
Shigella flexneri 64-5500 organism-specific BioCyc
Shigella flexneri 98-3193 organism-specific BioCyc
Shigella flexneri genome assembly NCTC1 organism-specific BioCyc
Shigella flexneri Castellani and Chalmers 1919 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
GOLD: 384 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Shigella flexneri culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
8049634650: Shigella flexneri FC470 organism-specific Integrated Microbial Genomes
2986049862: Shigella flexneri H110740167 organism-specific Integrated Microbial Genomes
8049563260: Shigella flexneri H081560312 organism-specific Integrated Microbial Genomes
2985874425: Shigella flexneri H133480481 organism-specific Integrated Microbial Genomes
8049613263: Shigella flexneri H094480142 organism-specific Integrated Microbial Genomes
8049602380: Shigella flexneri NCTC 8524 organism-specific Integrated Microbial Genomes
8059429282: Shigella flexneri SH200 organism-specific Integrated Microbial Genomes
8049552696: Shigella flexneri H142540404 organism-specific Integrated Microbial Genomes
8049683471: Shigella flexneri DMB SH20109 organism-specific Integrated Microbial Genomes
2986155235: Shigella flexneri H142520397 organism-specific Integrated Microbial Genomes
8059482392: Shigella flexneri sv. 2A BS942 organism-specific Integrated Microbial Genomes
8049579593: Shigella flexneri sv. 2A BS970 organism-specific Integrated Microbial Genomes
8059317759: Shigella flexneri DMB SH20108 organism-specific Integrated Microbial Genomes
8059380474: Shigella flexneri H103540516 organism-specific Integrated Microbial Genomes
8049651610: Shigella flexneri DMB SH20024 organism-specific Integrated Microbial Genomes
8049656412: Shigella flexneri H100980099 organism-specific Integrated Microbial Genomes
8049568465: Shigella flexneri FC1405 organism-specific Integrated Microbial Genomes
2983871354: Shigella flexneri H082440357 organism-specific Integrated Microbial Genomes
8071170594: Shigella flexneri STEFF_12 organism-specific Integrated Microbial Genomes
8059327565: Shigella flexneri H133320340 organism-specific Integrated Microbial Genomes
8059348923: Shigella flexneri H082400245 organism-specific Integrated Microbial Genomes
8049536497: Shigella flexneri H140640166 organism-specific Integrated Microbial Genomes
8049541996: Shigella flexneri H122040269 organism-specific Integrated Microbial Genomes
8059305592: Shigella flexneri sv. 2A BS937 organism-specific Integrated Microbial Genomes
8049591423: Shigella flexneri H124940462 organism-specific Integrated Microbial Genomes
8059424104: Shigella flexneri H101420053 organism-specific Integrated Microbial Genomes
8059311978: Shigella flexneri BJ4s01 organism-specific Integrated Microbial Genomes
8049646110: Shigella flexneri BJ4s04 organism-specific Integrated Microbial Genomes
2859788636: Shigella flexneri AUSMDU00008355 organism-specific Integrated Microbial Genomes
8114504676: Shigella flexneri FC906 GCA_002174695.1 organism-specific Integrated Microbial Genomes
8123013104: Shigella flexneri BJ4s03 organism-specific Integrated Microbial Genomes
8107355663: Shigella flexneri IB0708 organism-specific Integrated Microbial Genomes
8114510067: Shigella flexneri FDAARGOS_74 GCA_000783735.1 organism-specific Integrated Microbial Genomes
8106833751: Shigella flexneri 335516 organism-specific Integrated Microbial Genomes
8059460678: Shigella flexneri HN4s06 organism-specific Integrated Microbial Genomes
8059354114: Shigella flexneri H091500304 organism-specific Integrated Microbial Genomes
8059450339: Shigella flexneri sv. 2A BS982 organism-specific Integrated Microbial Genomes
8049667126: Shigella flexneri H103620462 organism-specific Integrated Microbial Genomes
8059332907: Shigella flexneri H112120282 organism-specific Integrated Microbial Genomes
8059396417: Shigella flexneri FC2101 organism-specific Integrated Microbial Genomes
2986037073: Shigella flexneri H101340238 organism-specific Integrated Microbial Genomes
8049607743: Shigella flexneri H143080485 organism-specific Integrated Microbial Genomes
2986028768: Shigella flexneri H143120820 organism-specific Integrated Microbial Genomes
8059369928: Shigella flexneri H142560508 organism-specific Integrated Microbial Genomes
8059375127: Shigella flexneri H141080405 organism-specific Integrated Microbial Genomes
2986203458: Shigella flexneri H095180467 organism-specific Integrated Microbial Genomes
2986481073: Shigella flexneri H082520293 organism-specific Integrated Microbial Genomes
2986012772: Shigella flexneri H102840284 organism-specific Integrated Microbial Genomes
8059338346: Shigella flexneri H130220181 organism-specific Integrated Microbial Genomes
8059290137: Shigella flexneri BCW_4877 organism-specific Integrated Microbial Genomes
8049574004: Shigella flexneri sv. 2A BS962 organism-specific Integrated Microbial Genomes
8059284748: Shigella flexneri ECCTRPUTH01 organism-specific Integrated Microbial Genomes
2985906374: Shigella flexneri H083560439 organism-specific Integrated Microbial Genomes
8049558050: Shigella flexneri H094820455 organism-specific Integrated Microbial Genomes
2874915312: Shigella flexneri 89-141 organism-specific Integrated Microbial Genomes
2985885193: Shigella flexneri H102420454 organism-specific Integrated Microbial Genomes
8059294912: Shigella flexneri H131720370 organism-specific Integrated Microbial Genomes
2986192990: Shigella flexneri H115060532 organism-specific Integrated Microbial Genomes
2985890609: Shigella flexneri H142680510 organism-specific Integrated Microbial Genomes
8049596725: Shigella flexneri FC1607 organism-specific Integrated Microbial Genomes
2844443253: Shigella flexneri 74-1170 organism-specific Integrated Microbial Genomes
2872192773: Shigella flexneri 94-3007 organism-specific Integrated Microbial Genomes
2872198387: Shigella flexneri 98-3193 organism-specific Integrated Microbial Genomes
2850784384: Shigella flexneri FDAARGOS_535 organism-specific Integrated Microbial Genomes
2877263951: Shigella flexneri 04-3145 organism-specific Integrated Microbial Genomes
2879765931: Shigella flexneri 73-5612 organism-specific Integrated Microbial Genomes
2879742664: Shigella flexneri 64-5500 organism-specific Integrated Microbial Genomes
8059391054: Shigella flexneri H133940521 organism-specific Integrated Microbial Genomes
2874962485: Shigella flexneri AUSMDU00008332 organism-specific Integrated Microbial Genomes
2879754190: Shigella flexneri FC906 organism-specific Integrated Microbial Genomes
2896607866: Shigella flexneri 71-2783 organism-specific Integrated Microbial Genomes
2874951433: Shigella flexneri NCTC 9728 organism-specific Integrated Microbial Genomes
2879770953: Shigella flexneri FDAARGOS_74 organism-specific Integrated Microbial Genomes
2872164251: Shigella flexneri SFL1520 organism-specific Integrated Microbial Genomes
2877269240: Shigella flexneri 95-3008 organism-specific Integrated Microbial Genomes
2872169409: Shigella flexneri 61-4982 organism-specific Integrated Microbial Genomes
2859793810: Shigella flexneri ATCC 29903 organism-specific Integrated Microbial Genomes
2609460183: Shigella flexneri 4S BJ10610 organism-specific Integrated Microbial Genomes
2681813161: Shigella flexneri ATCC 12025 SF75 organism-specific Integrated Microbial Genomes
2609460125: Shigella flexneri 12022 organism-specific Integrated Microbial Genomes
8059385890: Shigella flexneri H110720157 organism-specific Integrated Microbial Genomes
8049585302: Shigella flexneri 06-3102 organism-specific Integrated Microbial Genomes
2986165974: Shigella flexneri H083440270 organism-specific Integrated Microbial Genomes
2986391065: Shigella flexneri H081060147 organism-specific Integrated Microbial Genomes
8049661827: Shigella flexneri H084320507 organism-specific Integrated Microbial Genomes
2986401528: Shigella flexneri H090620054 organism-specific Integrated Microbial Genomes
8059359468: Shigella flexneri H140280072 organism-specific Integrated Microbial Genomes
8049678051: Shigella flexneri H104160250 organism-specific Integrated Microbial Genomes
2985911739: Shigella flexneri H083760197 organism-specific Integrated Microbial Genomes
8059343559: Shigella flexneri H144880858 organism-specific Integrated Microbial Genomes
8059401983: Shigella flexneri sv. 2A BS967 organism-specific Integrated Microbial Genomes
2986160597: Shigella flexneri H141400360 organism-specific Integrated Microbial Genomes
8059477173: Shigella flexneri H121800393 organism-specific Integrated Microbial Genomes
2985927815: Shigella flexneri NCTC 2 organism-specific Integrated Microbial Genomes
8059418934: Shigella flexneri H133680174 organism-specific Integrated Microbial Genomes
8049623583: Shigella flexneri sv. 2A BS971 organism-specific Integrated Microbial Genomes
2985901078: Shigella flexneri H100900352 organism-specific Integrated Microbial Genomes
8049531112: Shigella flexneri H114640488 organism-specific Integrated Microbial Genomes
8059322581: Shigella flexneri sv. 2A DMB SH123 organism-specific Integrated Microbial Genomes
2986023391: Shigella flexneri H144420736 organism-specific Integrated Microbial Genomes
8059413160: Shigella flexneri sv. 2A BS968 organism-specific Integrated Microbial Genomes
8006877619: Shigella flexneri BCW_4880 organism-specific Integrated Microbial Genomes
8049640314: Shigella flexneri SH4s09 organism-specific Integrated Microbial Genomes
8059407728: Shigella flexneri H141580407 organism-specific Integrated Microbial Genomes
8059434651: Shigella flexneri H140100099 organism-specific Integrated Microbial Genomes
8059455595: Shigella flexneri sv. 2A BS988 organism-specific Integrated Microbial Genomes
Shigella flexneri taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Shigella flexneri | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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