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Taxonomy browser (Arabidopsis lyrata)

Arabidopsis lyrata

Taxonomy ID: 59689 (for references in articles please use NCBI:txid59689)
current name
Arabidopsis lyrata (L.) O'Kane & Al-Shehbaz
NCBI BLAST name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
common name(s) lyrate rockcress
Lineage( abbreviated )
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
   Entrez records   
Database name Subtree links Direct links
Nucleotide 136,211 63,967
Protein 98,820 2,147
Genome 1 1
Popset 626 545
GEO Datasets 220 138
PubMed Central 1,617 1,607
Gene 39,832 131
SRA Experiments 1,086 622
Protein Clusters 19,450 -
Identical Protein Groups 54,687 1,068
Bio Project 67 42
Bio Sample 1,129 663
Bio Systems 263 -
Assembly 4 -
Probe 252 252
Taxonomy 5 1

Comments and References:

O'Kane M & Al-Shehbaz IA 1997
O'Kane SL, Jr. and Al-Shehbaz IH. 1997. A synopsis of Arabidopsis (Brassicaceae). Novon 7: 323-327.
FNA - Arabidopsis
Al-Shehbaz IA. 2009. Arabidopsis (de Candolle) Heynhold in F. Holl and G. Heynhold, Fl. Sachsen. 1: 538. 1842. [name conserved]. In Flora of North America Editorial Committee (Eds.) Flora of North America North of Mexico, Vol. 7: Magnoliophyta: Salicaceae to Brassicaceae. New York and Oxford. On-line version.

Genome Information

Go to NCBI genomic BLAST page for Arabidopsis lyrata
Genome view: 8 chromosomes
Names 1 2 3 4 5 6 7 8

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Arabidopsis lyrata taxonomy taxonomy/phylogenetic Arctos Specimen Database
2 records from this provider supplemental materials Dryad Digital Repository
Arabidopsis lyrata taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0017639 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
2614208501: Arabidopsis lyrata organism-specific Integrated Microbial Genomes
Arabidopsis lyrata taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Arabidopsis lyrata taxonomy/phylogenetic Plants of the World Online
Arabidopsis lyrata taxonomy/phylogenetic The International Plant Names Index
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Arabidopsis lyrata organism-specific WebScipio - eukaryotic gene identification
diArk: Arabidopsis lyrata organism-specific diArk - a resource for eukaryotic genome research
Notes:
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A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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