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Taxonomy browser (Escherichia coli)

Escherichia coli

Taxonomy ID: 562 (for references in articles please use NCBI:txid562)
current name
Escherichia coli (Migula 1895) Castellani and Chalmers 1919
type strain of Escherichia coli: ATCC:11775, CCUG:24, CCUG:29300, CIP:54.8, DSM:30083, JCM:1649, BCCM/LMG:2092, NBRC:102203, NCCB:54008, NCTC:9001, IAM:12119
homotypic synonym:
"Bacillus coli" Migula 1895, effective name 1)
"Bacterium coli" (Migula 1895) Lehmann and Neumann 1896, effective name 1)
Enterococcus coli
includes:
Escherichia sp. 3_2_53FAA
Escherichia sp. MAR
bacterium 10a
bacterium E3
equivalent:
Escherichia/Shigella coli
NCBI BLAST name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Bacterium coli commune" Escherich 1885, effective name 1)
common name(s) E. coli
Lineage( abbreviated )
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
   Entrez records   
Database name Subtree links Direct links
Nucleotide 6,782,052 5,644,634
Protein 53,503,837 42,091,450
Structure 9,380 5,493
Genome 1 1
Popset 5,164 5,154
Conserved Domains 48 29
GEO Datasets 14,015 8,333
PubMed Central 303,739 303,733
Gene 363,980 44,724
SRA Experiments 131,451 113,423
GEO Profiles 313,301 298,677
Protein Clusters 17,571 17,571
Identical Protein Groups 4,526,917 4,204,390
Bio Project 7,286 3,904
Bio Sample 141,203 124,010
Bio Systems 22,561 1,814
Assembly 20,541 16,860
Probe 2,210 1,804
PubChem BioAssay 16,622 14,911
Taxonomy 3,322 1

Notes:

Comments and References:

Castellani A & Chalmers AJ (1919)
Castellani, A., and Chalmers, A.J. Manual of Tropical Medicine, 3rd ed. (1919). Williams Wood and Co., New York. [No PubMed abstract available.]
Escherich T (1885)
Escherich, T. "Die Darmbakterien des Neugeborenen und Sauglingen" Fortschr. Med. (1885) 3:515-528,547-554. [No PubMed abstract available.]
Lapage SP et al. (1992) (reference with type strain information)
Lapage, S.P., Sneath, P.H.A., Lessel, E.F., Skerman, V.B.D., Seeliger, H.P.R., and Clark, W.A. "International Code of Nomenclature of Bacteria (1990 revision)." American Society for Microbiology, Washington, D.C. (1992). [No PubMed record available.]
Lehmann KB & Neumann R (1896)
Lehman, K.B., and Neumann, R. Atlas und Grundriss der Bakeriologie und Lehrbuch der speziellen bakteriologischen Diagnositk. 1st Ed., (1896) J.F. Lehmann, Munchen. [No PubMed record available.]
Martinez-Murcia AJ et al. (1999)
Martinez-Murcia, A.J., Anton, A.I., Rodriguez-Valera, F. "Patterns of sequence variation in two regions of the 16S rRNA multigene family of Escherichia coli." Int. J. Syst. Bacteriol. (1999) 49:601-610.
Migula W (1895)
Migula, W. "Bacteriaceae (Stabchenbacterien)." In: Engler and Prantl (Editors), Die Naturlichen Pflanzenfamilien. (1895) W. Engelmann, Leipzig, Teil I Abt. 1a, pp.20-30. [No PubMed record available.]
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Wadley TD et al. (2019)
Wadley, T.D., Jenjaroenpun, P., Wongsurawat, T., Ussery, D.W., and Nookaew, I. "Complete genome and plasmid sequences of Escherichia coli type strain ATCC 11775." Microbiol. Resour. Announc. (2019) 8:e00046-19.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Escherichia coli meta-databases BacDive
102 records from this provider organism-specific BioCyc
2 records from this provider supplemental materials Dryad Digital Repository
Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
820 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Escherichia coli culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
1645 records from this provider organism-specific Integrated Microbial Genomes
Escherichia coli taxonomy/phylogenetic Integrated Taxonomic Information System
Escherichia coli taxonomy/phylogenetic Lifemap
4 records from this provider taxonomy/phylogenetic NCBI taxonomy bookmarks
Escherichia coli taxonomy/phylogenetic TreeBase
Escherichia coli Castellani & Chalmers, 1919 taxonomy/phylogenetic World Register of Marine Species
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Information from sequence entries

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