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Taxonomy browser (Escherichia coli)

Escherichia coli

Taxonomy ID: 562 (for references in articles please use NCBI:txid562)
current name
Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) in [Skerman VBD et al. (1980)]
neotype strain of Escherichia coli: ATCC:11775, CCUG:24, CCUG:29300, CIP:54.8, DSM:30083, JCM:1649, BCCM/LMG:2092, NBRC:102203, NCCB:54008, NCTC:9001, IAM:12119, personal::U5/41
homotypic synonym:
"Bacillus coli" Migula 1895, effective name 1)
"Bacterium coli" (Migula 1895) Lehmann and Neumann 1896, effective name 2)
Enterococcus coli
includes:
Achromobacter sp. ATCC 35328
Escherichia sp. 3_2_53FAA
Escherichia sp. MAR
bacterium 10a
bacterium E3
equivalent:
Escherichia/Shigella coli
NCBI BLAST name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Host: bacteria|vertebrates
Other names:
heterotypic synonym
"Bacterium coli commune" Escherich 1885, effective name 3)
common name(s) E. coli
Lineage( full )
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 14,103,118 12,781,008 553
Protein 84,243,537 70,817,485 -
Structure 13,119 7,686 -
Conserved Domains 50 34 -
GEO Datasets 27,857 15,912 -
PubMed Central 475,209 475,199 -
Gene 383,511 58,900 -
SRA Experiments 511,067 465,253 -
GEO Profiles 313,301 298,677 -
Protein Clusters 17,571 17,571 -
Identical Protein Groups 21,820,389 21,417,828 -
BioProject 14,634 10,328 -
BioSample 581,004 538,105 49
Datasets Genome 357,906 347,968 -
Genetic Testing Registry 7 5 -
PubChem BioAssay 24,952 23,898 -
Taxonomy 3,715 1 -

Notes:

Comments and References:
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
image:Escherichia coli
Image from Wikimedia Commons under a Public Domain license.
* Image may not have been verified for accuracy by NCBI Taxonomy.
Castellani A & Chalmers AJ (1919)
Castellani, A., and Chalmers, A.J. Manual of Tropical Medicine, 3rd ed. (1919). Williams Wood and Co., New York. [No PubMed abstract available.]
Escherich T (1885)
Escherich, T. "Die Darmbakterien des Neugeborenen und Sauglingen" Fortschr. Med. (1885) 3:515-528,547-554. [No PubMed abstract available.]
Lapage SP et al. (1992) (reference with type strain information)
Lapage, S.P., Sneath, P.H.A., Lessel, E.F., Skerman, V.B.D., Seeliger, H.P.R., and Clark, W.A. "International Code of Nomenclature of Bacteria (1990 revision)." American Society for Microbiology, Washington, D.C. (1992). [No PubMed record available.]
Lehmann KB & Neumann R (1896)
Lehman, K.B., and Neumann, R. Atlas und Grundriss der Bakeriologie und Lehrbuch der speziellen bakteriologischen Diagnositk. 1st Ed., (1896) J.F. Lehmann, Munchen. [No PubMed record available.]
Martinez-Murcia AJ et al. (1999)
Martinez-Murcia, A.J., Anton, A.I., Rodriguez-Valera, F. "Patterns of sequence variation in two regions of the 16S rRNA multigene family of Escherichia coli." Int. J. Syst. Bacteriol. (1999) 49:601-610.
Migula W (1895)
Migula, W. "Bacteriaceae (Stabchenbacterien)." In: Engler and Prantl (Editors), Die Naturlichen Pflanzenfamilien. (1895) W. Engelmann, Leipzig, Teil I Abt. 1a, pp.20-30. [No PubMed record available.]
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Wadley TD et al. (2019)
Wadley, T.D., Jenjaroenpun, P., Wongsurawat, T., Ussery, D.W., and Nookaew, I. "Complete genome and plasmid sequences of Escherichia coli type strain ATCC 11775." Microbiol. Resour. Announc. (2019) 8:e00046-19.

External Information Resources (NCBI LinkOut)

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Escherichia coli meta-databases BacDive - Free access to bacterial information database
1116 records from this provider organism-specific BioCyc
6 records from this provider supplemental materials Dryad Digital Repository - Access Curated Datasets
Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
GOLD: 13696 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Escherichia coli culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
2353 records from this provider organism-specific Integrated Microbial Genomes
Escherichia coli taxonomy/phylogenetic Integrated Taxonomic Information System
Escherichia coli taxonomy/phylogenetic Lifemap
4 records from this provider taxonomy/phylogenetic NCBI taxonomy bookmarks
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Escherichia coli Castellani & Chalmers, 1919 taxonomy/phylogenetic Ocean Biogeographic Information System
Escherichia coli (T) | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Escherichia coli taxonomy/phylogenetic TreeBase
Escherichia coli Castellani & Chalmers, 1919 taxonomy/phylogenetic World Register of Marine Species
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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