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Taxonomy browser (Dickeya chrysanthemi)

Dickeya chrysanthemi

Taxonomy ID: 556 (for references in articles please use NCBI:txid556)
current name
Dickeya chrysanthemi (Burkholder et al. 1953) Samson et al. 2005
type strain of Dickeya chrysanthemi: ATCC:11663, CCUG:38766, CFBP:2048, CIP:82.99, DSM:4610, ICMP:5703, BCCM/LMG:2804, NCAIM B.01392, NCPPB:402
homotypic synonym:
"Pectobacterium parthenii var. chrysanthemi" (Burkholder et al. 1953) Hellmers 1958, effective name 1)
"Pectobacterium carotovorum var. chrysanthemi" (Burkholder et al. 1953) Graham and Dowson 1960, effective name 1)
"Erwinia carotovora var. chrysanthemi" (Burkholder et al. 1953) Dye 1969, effective name 1)
Erwinia chrysanthemi Burkholder et al. 1953 (Approved Lists 1980), nom. approb. 2)
Pectobacterium chrysanthemi (Burkholder et al. 1953) Brenner et al. 1973 (Approved Lists 1980) emend. Hauben et al. 1998, nom. approb. 2)
Erwinia chrysanhemi
includes:
Dickeya sp. DSM 30177
Dickeya sp. DSM 30179
Dickeya sp. L11
NCBI BLAST name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic genbank synonym
Pectobacterium chrysanthemi = Erwinia chrysanthemi
heterotypic synonym
Pectobacterium parthenii var. dianthicola
heterotypic synonym
"Pectobacterium cartovorum f. sp. chrysanthemi" Dowson 1957, effective name 1)
heterotypic synonym
"Pectobacterium parthenii" Hellmers 1958, effective name 1)
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Dickeya
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 1,845 1,554 162
Protein 21,017 16,341 -
Structure 80 79 -
Genome 1 1 -
Popset 93 93 -
GEO Datasets 3 3 -
PubMed Central 1,870 1,868 -
Gene 8,667 1 -
SRA Experiments 2 2 -
Protein Clusters 3,333 3,333 -
Identical Protein Groups 16,574 15,630 -
Bio Project 10 6 -
Bio Sample 20 13 2
Bio Systems 298 - -
Assembly 7 3 1
PubChem BioAssay 9 9 -
Taxonomy 5 1 -

Notes:

Comments and References:

Dowson WJ (1957)
Dowson, W.J. Plant Diseases Due to Bacteria. 2nd ed., (1957). University Press, Cambridge. [No PubMed record available.]
Associate Editor IJSB (1999) (Erwinia)
Associate Editor, IJSB: Validation List no. 68 (footnote //). Int. J. Syst. Bacteriol. (1999) 49:1-3.
Brenner DJ et al. (1973)
Brenner, D.J., Steigerwalt, A.G., Miklos, G.V., and Fanning, G.R. "Deoxyribonucleic acid relatedness among erwiniae and other Enterobacteriaceae: the soft-rot organisms (genus Pectobacterium Waldee)." Int. J. Syst. bacteriol. (1973) 23:205-216. [No PubMed record available.]
Dye DW (1969)
Dye, D.W. "A taxonomic study of the genus Erwinia." N. Z. J. Sci. Technol. (1969) 12:223-236. [No PubMed record available.]
Hauben L et al. (1998)
Hauben, L., Moore, E.R.B., Vauterin, L., Steenackers, M., Mergaert, J., Verdonck, L., and Swings, J. "Phylogenetic position of phytopathogens within the Enterobacteriaceae." Syst. Appl. Microbiol. (1998) 21:384-397.
Hellmers E (1958)
Hellmers, E. "Four wilt diseases of perpetual-flowering carnations in Denmark." Dan. Bot. Ark. (1958) 18:1-200. [No PubMed record available.]
Graham DC & Dowson WJ (1960)
Graham, D.C., and Dowson, W.J. "The coliform bacteria associated with potato blackleg and other soft rots. I. Their pathogenicity in relation to temperature." Ann. Appl. Biol. (1960) 48:51-57. [No PubMed record available.]
Samson R et al. (2005)
Samson, R., Legendre, J.B., Christen, R., Fischer-Le Saux, M., Achouak, W., and Gardan, L. "Transfer of Pectobacterium chrysanthemi (Burkholder et al. 1953) Brenner et al. 1973 and Brenneria paradisiaca to the genus Dickeya gen. nov. as Dickeya chrysanthemi comb. nov. and Dickeya paradisiaca comb. nov. and delineation of four novel species, Dickeya dadantii sp. nov., Dickeya dianthicola sp. nov., Dickeya dieffenbachiae sp. nov. and Dickeya zeae sp. nov." Int. J. Syst. Evol. Microbiol. (2005) 55:1415-1427.
Skerman VBD et al. (1980) (Erwinia chrysanthemi)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Skerman VBD et al. (1980) (Pectobacterium chrysanthemi)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Young JM et al. (1996) (reference with type strain information)
Young, J.M., Saddler, G.S., Takikawa, Y., De Boer, S.H., Vauterin, L., Gardan, L., Gvozdyak, R.I., and Stead, D.E. "Names of plant pathogenic bacteria 1864-1995." Rev. Plant Pathol. (1996) 75:721-763. [No PubMed record available.]
Dicekya chrysanthemi = Pectobacterium chrysanthemi = Erwinia chrysanthemi
P. chrysanthemi and E. chrysanthemi are homotypic synonyms. Samson et al. (2005) propose the transfer of this species to the genus Dickeya.
Burkholder WH et al. (1953)
Burkholder, W.H., McFadden, L.A., Dinock, A.V. "A bacterial blight of chrysanthemums." Phytopathology (1953) 43:522-526. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Dickeya chrysanthemi meta-databases BacDive
Dickeya chrysanthemi (Burkholder et al. 1953) Samson et al. 2005 taxonomy/phylogenetic Encyclopedia of life
2 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Erwinia chrysanthemi culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
2630968792: Dickeya chrysanthemi L11 organism-specific Integrated Microbial Genomes
Erwinia chrysanthemi taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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