Taxonomy browser (Dickeya chrysanthemi)

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Taxonomy browser (Dickeya chrysanthemi)

Dickeya chrysanthemi

Taxonomy ID: 556 (for references in articles please use NCBI:txid556)

current name

Dickeya chrysanthemi (Burkholder et al. 1953) Samson et al. 2005

basionym:

Erwinia chrysanthemi Burkholder et al. 1953 (Approved Lists 1980), nom. approb.¹⁾

type strain of Erwinia chrysanthemi: ATCC :11663, CCUG :38766, CFBP:2048, CIP:82.99, DSM :4610, ICMP :5703, BCCM/LMG :2804, NCAIM B.01392, NCPPB:402

homotypic synonym:

"Pectobacterium parthenii var. chrysanthemi" (Burkholder et al. 1953) Hellmers 1958, effective name²⁾

"Pectobacterium carotovorum var. chrysanthemi" (Burkholder et al. 1953) Graham and Dowson 1960, effective name³⁾

"Erwinia carotovora var. chrysanthemi" (Burkholder et al. 1953) Dye 1969, effective name⁴⁾

Pectobacterium chrysanthemi (Burkholder et al. 1953) Brenner et al. 1973 (Approved Lists 1980) emend. Hauben et al. 1998

includes:

Dickeya sp. DSM 30177

Dickeya sp. DSM 30179

Dickeya sp. L11

NCBI BLAST name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

Pectobacterium parthenii var. dianthicola

heterotypic synonym

"Pectobacterium cartovorum f. sp. chrysanthemi" Dowson 1957, effective name⁵⁾

heterotypic synonym

"Pectobacterium parthenii" Hellmers 1958, effective name⁶⁾

Lineage( full ): cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Dickeya

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	1,991	1,700	165
Protein	33,689	29,416	-
Structure	81	81	-
GEO Datasets	3	3	-
PubMed Central	2,157	2,155	-
Gene	8,745	1	-
SRA Experiments	4	4	-
Protein Clusters	3,333	3,333	-
Identical Protein Groups	23,345	22,724	-
BioProject	13	9	-
BioSample	26	19	2
Datasets Genome	12	8	-
PubChem BioAssay	10	10	-
Taxonomy	5	1	-

Notes:

1) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
4) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
5) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
6) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).

Comments and References:

Dicekya chrysanthemi = Pectobacterium chrysanthemi = Erwinia chrysanthemi

P. chrysanthemi and E. chrysanthemi are homotypic synonyms. Samson et al. (2005) propose the transfer of this species to the genus Dickeya.

Brenner DJ et al. (1973)

Brenner, D.J., Steigerwalt, A.G., Miklos, G.V., and Fanning, G.R. "Deoxyribonucleic acid relatedness among erwiniae and other Enterobacteriaceae: the soft-rot organisms (genus Pectobacterium Waldee)." Int. J. Syst. bacteriol. (1973) 23:205-216. [No PubMed record available.]

Dowson WJ (1957)

Dowson, W.J. Plant Diseases Due to Bacteria. 2nd ed., (1957). University Press, Cambridge. [No PubMed record available.]

Dye DW (1969)

Dye, D.W. "A taxonomic study of the genus Erwinia." N. Z. J. Sci. Technol. (1969) 12:223-236. [No PubMed record available.]

Hauben L et al. (1998)

Hauben, L., Moore, E.R.B., Vauterin, L., Steenackers, M., Mergaert, J., Verdonck, L., and Swings, J. "Phylogenetic position of phytopathogens within the Enterobacteriaceae." Syst. Appl. Microbiol. (1998) 21:384-397.

Hellmers E (1958)

Hellmers, E. "Four wilt diseases of perpetual-flowering carnations in Denmark." Dan. Bot. Ark. (1958) 18:1-200. [No PubMed record available.]

Graham DC & Dowson WJ (1960)

Graham, D.C., and Dowson, W.J. "The coliform bacteria associated with potato blackleg and other soft rots. I. Their pathogenicity in relation to temperature." Ann. Appl. Biol. (1960) 48:51-57. [No PubMed record available.]

Samson R et al. (2005)

Samson, R., Legendre, J.B., Christen, R., Fischer-Le Saux, M., Achouak, W., and Gardan, L. "Transfer of Pectobacterium chrysanthemi (Burkholder et al. 1953) Brenner et al. 1973 and Brenneria paradisiaca to the genus Dickeya gen. nov. as Dickeya chrysanthemi comb. nov. and Dickeya paradisiaca comb. nov. and delineation of four novel species, Dickeya dadantii sp. nov., Dickeya dianthicola sp. nov., Dickeya dieffenbachiae sp. nov. and Dickeya zeae sp. nov." Int. J. Syst. Evol. Microbiol. (2005) 55:1415-1427.

Skerman VBD et al. (1980) (Erwinia chrysanthemi)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Skerman VBD et al. (1980) (Pectobacterium chrysanthemi)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Young JM et al. (1996)

Young, J.M., Saddler, G.S., Takikawa, Y., De Boer, S.H., Vauterin, L., Gardan, L., Gvozdyak, R.I., and Stead, D.E. "Names of plant pathogenic bacteria 1864-1995." Rev. Plant Pathol. (1996) 75:721-763. [N.B.: reference with type strain information]

Burkholder WH et al. (1953)

Burkholder, W.H., McFadden, L.A., Dinock, A.V. "A bacterial blight of chrysanthemums." Phytopathology (1953) 43:522-526. [No PubMed record available.]

Associate Editor IJSB (1999) (Erwinia)

Associate Editor, IJSB: Validation List no. 68 (footnote //). Int. J. Syst. Bacteriol. (1999) 49:1-3.

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Dickeya chrysanthemi	meta-databases	BacDive - Free access to bacterial information database
Dickeya chrysanthemi (Burkholder et al. 1953) Samson et al. 2005	taxonomy/phylogenetic	Encyclopedia of life
GOLD: Go0115433	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Erwinia chrysanthemi	culture/stock collections	Global Catalogue of Microorganisms
Related Immune Epitope Information	gene/protein/disease-specific	Immune Epitope Database and Analysis Resource
2630968792: Dickeya chrysanthemi L11	organism-specific	Integrated Microbial Genomes
Dickeya chrysanthemi (T) \| SeqCode Registry	taxonomy/phylogenetic	SeqCode Registry
Erwinia chrysanthemi	taxonomy/phylogenetic	Systematic Mycology and Microbiology Laboratory, Fungal Databases
Wikipedia	taxonomy/phylogenetic	iPhylo

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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