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Taxonomy browser (Trichophyton rubrum)

Trichophyton rubrum

Taxonomy ID: 5551 (for references in articles please use NCBI:txid5551)
current name
Trichophyton rubrum (Castell.) Sabour., 1911
basionym:
Epidermophyton rubrum Castell., 1910
culture from neotype of Epidermophyton rubrum: CBS:392.58
NCBI BLAST name: ascomycete fungi
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 4 (Mold Mitochondrial; Protozoan Mitochondrial; Coelenterate Mitochondrial; Mycoplasma; Spiroplasma)
Other names:
heterotypic synonym
Trichophyton megninii R. Blanch., 1895
heterotypic synonym
Sabouraudites ruber (Cazalbou) Nann., 1934
basionym:
Microsporum rubrum Cazalbou, 1913
heterotypic synonym
Trichophyton fischeri J. Kane, 1977
type material of Trichophyton fischeri: ATCC:32871, CBS:100081, IMI:213848
heterotypic synonym
Trichophyton raubitschekii J. Kane, Salkin, Weitzman & Smitka, 1981
type material of Trichophyton raubitschekii: ATCC:42631, CBS:100084
heterotypic synonym
Trichophyton kanei Summerb., 1987
type material of Trichophyton kanei: ATCC:62345, CBS:289.86, TRTC:50887
Lineage( full )
cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Arthrodermataceae; Trichophyton
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 66,621 50,633 20
Protein 133,345 16,191 -
Structure 7 5 -
GEO Datasets 350 350 -
PubMed Central 2,946 2,946 -
Gene 9,906 45 -
SRA Experiments 342 304 -
Identical Protein Groups 23,377 11,633 -
BioProject 65 46 -
BioSample 517 491 4
Datasets Genome 25 15 -
PubChem BioAssay 329 329 -
Taxonomy 17 1 -

Comments and References:

Gräser Y et al. (2000), other link:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC87382/
Gräser Y, Kuijpers AF, Presber W, de Hoog GS. 2000. Molecular taxonomy of the Trichophyton rubrum complex. J Clin Microbiol 38(9):3329-36.
Su H et al. (2019), other link:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711931/
Su H, Packeu A, Ahmed SA, Al-Hatmi AMS, Blechert O, İlkit M, Hagen F, Gräser Y, Liu W, Deng S, Hendrickx M, Xu J, Zhu M, de Hoog S. 2019. Species Distinction in the Trichophyton rubrum Complex. J Clin Microbiol 57(9)

Genome Information

Go to NCBI genomic BLAST page for Trichophyton rubrum

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Trichophyton rubrum (Castell.) Sabour. 1911 taxonomy/phylogenetic Encyclopedia of life
GOLD: 4 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Trichophyton rubrum culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
Trichophyton rubrum (Castell.) Sabour. 1911 taxonomy/phylogenetic Index Fungorum
2739368118: Trichophyton rubrum CMCC(F)T1i organism-specific Integrated Microbial Genomes
Trichophyton rubrum (Castellani) Sabouraud taxonomy/phylogenetic MycoBank
Trichophyton rubrum taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Trichophyton rubrum taxonomy/phylogenetic TreeBase
2 records from this provider organism-specific WebScipio - eukaryotic gene identification
3 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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