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Taxonomy browser (Pectobacterium carotovorum)

Pectobacterium carotovorum

Taxonomy ID: 554 (for references in articles please use NCBI:txid554)
current name
Pectobacterium carotovorum (Jones 1901) Waldee 1945 (Approved Lists 1980) emend. Portier et al. 2019
homotypic synonym:
"Bacillus carotovorus" Jones 1901, effective name 1)
"Bacterium carotovorum" (Jones 1901) Lehmann and Neumann 1927, effective name 2)
Erwinia carotovora (Jones 1901) Bergey et al. 1923 (Approved Lists 1980), nom. approb. 3)
Pectobacterium carotovorum (Jones 1901) Waldee 1945 (Approved Lists 1980) emend. Hauben et al. 1999, nom. approb. 4)
Pectobacterium carotovorum (Jones 1901) Waldee 1945 (Approved Lists 1980) emend. Gardan et al. 2003, nom. approb. 5)
type strain of Pectobacterium carotovorum: ATCC:15713, CFBP:2046, CIP:82.83, DSM:30168, HAMBI:1429, ICMP:5702, BCCM/LMG:2404, NCAIM B.01109, NCPPB:312, VKM:B-1247
NCBI BLAST name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Pectobacterium
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 12,062 6,310 325
Protein 313,461 146,669 -
Structure 20 14 -
Genome 1 1 -
Popset 201 176 -
GEO Datasets 35 21 -
PubMed Central 3,779 3,768 -
Gene 17,677 4,436 -
SRA Experiments 107 58 -
Protein Clusters 4,424 4,424 -
Identical Protein Groups 180,346 108,722 -
BioProject 77 43 -
BioSample 209 120 4
Assembly 120 65 -
PubChem BioAssay 57 54 -
Taxonomy 8 1 -

Notes:

Comments and References:

image:Pectobacterium carotovorum
Associate Editor IJSB (1999) (Erwinia)
Associate Editor, IJSB: Validation List no. 68 (footnote //). Int. J. Syst. Bacteriol. (1999) 49:1-3.
Bergey DH et al. (1923)
Bergey, D.H., Harrison, F.C., Breed, R.S., Hammer B.W., and Huntoon, F.M. Bergey's Manual of Determinative Bacteriology, 1st ed. (1923) The Williams and Wilkins Co., Baltimore, pp. 1-442. [No PubMed record available.]
Gardan L et al. (2003)
Gardan, L., Gouy, C., Christen, R., and Samson, R. "Elevation of three subspecies of Pectobacterium carotovorum to species level: Pectobacterium atrosepticum sp. nov., Pectobacterium betavasculorum sp. nov. and Pectobacterium wasabiae sp. nov." Int. J. Syst. Evol. Microbiol. (2003) 53:449-454.
Hauben L et al. (1998)
Hauben, L., Moore, E.R.B., Vauterin, L., Steenackers, M., Mergaert, J., Verdonck, L., and Swings, J. "Phylogenetic position of phytopathogens within the Enterobacteriaceae." Syst. Appl. Microbiol. (1998) 21:384-397.
Jones LR (1901)
Jones, L.R. "Bacillus carotovorus n. sp., die Ursache einer weichen Faulnis der Mohre." Zentrabl. Bakteriol. Parasitenk. Infektionskr. Hyg. Abt. II (1901) 7:12-21. [No PubMed record available.]
Lehmann KB & Neumann R (1927)
Lehmann, K.B., and Neumann, R. Bakteriologie insbesondere Bakteriologische Diagnostik. II. Allgmeine und spezielle Bakteriologie 7 Aufl. (1927) J.F. Lehmann, Munchen. [No PubMed record available.]
Portier P et al. (2019)
Portier, P., Pédron, J., Taghouti, G., Fischer-Le Saux, M., Caullireau, E., Bertrand, C., Laurent, A., Chawki, K., Oulgazi, S., Moumni, M., Andrivon, D., Dutrieux, C., Faure, D., Hélias, V., and Barny, M.A. "Elevation of Pectobacterium carotovorum subsp. odoriferum to species level as Pectobacterium odoriferum sp. nov., proposal of Pectobacterium brasiliense sp. nov. and Pectobacterium actinidiae sp. nov., emended description of Pectobacterium carotovorum and description of Pectobacterium versatile sp. nov., isolated from streams and symptoms on diverse plants." Int. J. Syst. Evol. Microbiol. (2019) 69(10):3207-3216.
Skerman VBD et al. (1980) (Erwinia carotovora)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.
Skerman VBD et al. (1980) (Pectobacterium carotovorum)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.
Waldee EL (1945)
Waldee, E.L. "Comparative studies of some peritrichous phytopathogenic bacteria." Iowa State Coll. J. Sci. (1945) 19:435-484. [No PubMed record available.]
Young JM et al. (1996) (reference with type strain information)
Young, J.M., Saddler, G.S., Takikawa, Y., De Boer, S.H., Vauterin, L., Gardan, L., Gvozdyak, R.I., and Stead, D.E. "Names of plant pathogenic bacteria 1864-1995." Rev. Plant Pathol. (1996) 75:721-763. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Pectobacterium carotovorum meta-databases BacDive
2 records from this provider organism-specific BioCyc
7 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Pectobacterium carotovorum culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
20 records from this provider organism-specific Integrated Microbial Genomes
Erwinia carotovora taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Erwinia carotovora (Jones, 1901) Bergey et al., 1923 taxonomy/phylogenetic World Register of Marine Species
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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