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Taxonomy browser (Oscillospiraceae)

Oscillospiraceae

Taxonomy ID: 216572 (for references in articles please use NCBI:txid216572)
current name
Oscillospiraceae Peshkoff 1940 (Approved Lists 1980) Peshkoff 1940 in [Skerman VBD et al. (1980)]
homotypic synonym:
Oscillospiraceae Peshkoff 1940 (Approved Lists 1980) emend. Tindall 2019, emended name 1) in [Tindall BJ (2019b)]
NCBI BLAST name: firmicutes
Rank: family
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Ruminococcaceae Rainey 2010 in [VALIDATION LIST No. 132 (2010)]
heterotypic synonym
Hungateiclostridiaceae Zhang et al. 2018, nom. illeg. 2)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales
   Entrez records   
Database name Subtree links Direct links
Nucleotide 287,471 11
Protein 2,462,495 19,257
Structure 356 -
Genome 425 -
Popset 269 248
Conserved Domains 9 -
GEO Datasets 594 -
PubMed Central 20,781 7,638
Gene 113,098 -
SRA Experiments 3,412 27
Protein Clusters 3,282 -
Identical Protein Groups 4,473,512 19,259
Bio Project 1,382 12
Bio Sample 39,479 44
Bio Systems 154 -
Assembly 5,649 -
PubChem BioAssay 24 -
Taxonomy 1,336 1

Notes:

Comments and References:

Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
Tindall BJ (2019b), PubMed: abstract
Tindall, B.J. "The names Hungateiclostridium Zhang et al. 2018, Hungateiclostridium thermocellum (Viljoen et al. 1926) Zhang et al. 2018, Hungateiclostridium cellulolyticum (Patel et al. 1980) Zhang et al. 2018, Hungateiclostridium aldrichii (Yang et al. 1990) Zhang et al. 2018, Hungateiclostridium alkalicellulosi (Zhilina et al. 2006) Zhang et al. 2018, Hungateiclostridium clariflavum (Shiratori et al. 2009) Zhang et al. 2018, Hungateiclostridium straminisolvens (Kato et al. 2004) Zhang et al. 2018 and Hungateiclostridium saccincola (Koeck et al. 2016) Zhang et al. 2018 contravene Rule 51b of the International Code of Nomenclature of Prokaryotes and require replacement names in the genus Acetivibrio Patel et al. 1980." Int. J. Syst. Evol. Microbiol. (2019) 69(12):3927-3932.
VALIDATION LIST No. 132 (2010)
Validation List No. 132: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2010) 60:469-472.
Yanagita K et al. (2003)
Yanagita, K., Manome, A., Meng, X.-Y. , Hanada, S., Kanagawa, T., Tsuchida, T., Mackie, R.I., and Kamagata, Y. "Flow cytometric sorting, phylogenetic analysis and in situ detection of Oscillospira guilliermondii, a large, morphologically conspicuous but uncultured ruminal bacterium." Int. J. Syst. Evol. Microbiol. (2003) 53:1609-1614. Published online 9 May 2003: DOI 10.1099/ijs.0.02541-0
Zhang X et al. (2018)
Zhang, X., Tu, B., Dai, L.-r., Lawson, P.A., Zheng, Z.-z., Liu, L.-Y., Deng, Y., Zhang, H., and Cheng, L. "Petroclostridium xylanilyticum gen. nov., sp. nov., a xylan-degrading bacterium isolated from an oilfield, and reclassification of clostridial cluster III members into four novel genera in a new Hungateiclostridiaceae fam. nov." Int. J. Syst. Evol. Microbiol. (2018) 68:3197-3211.
Rainey FA (2009c)
Rainey, F.A. "Family VIII. Ruminococcaceae fam. nov." In: P. De Vos, G.M. Garrity, D. Jones, N.R. Krieg, W. Ludwig, F.A. Rainey, K.H. Schleifer, and W.B. Whitman (eds): Bergey's Manual of Systematic Bacteriology, second edition, vol. 3 (The Firmicutes), Springer, Dordrecht, Heidelberg, London, New York. (2009) p. 1016. [No PubMed record available.]
Tindall BJ (2019b), doi:10.1099/ijsem.0.003685
Tindall, B.J. "The names Hungateiclostridium Zhang et al. 2018, Hungateiclostridium thermocellum (Viljoen et al. 1926) Zhang et al. 2018, Hungateiclostridium cellulolyticum (Patel et al. 1980) Zhang et al. 2018, Hungateiclostridium aldrichii (Yang et al. 1990) Zhang et al. 2018, Hungateiclostridium alkalicellulosi (Zhilina et al. 2006) Zhang et al. 2018, Hungateiclostridium clariflavum (Shiratori et al. 2009) Zhang et al. 2018, Hungateiclostridium straminisolvens (Kato et al. 2004) Zhang et al. 2018 and Hungateiclostridium saccincola (Koeck et al. 2016) Zhang et al. 2018 contravene Rule 51b of the International Code of Nomenclature of Prokaryotes and require replacement names in the genus Acetivibrio Patel et al. 1980." Int. J. Syst. Evol. Microbiol. (2019) 69(12):3927-3932.
Peshkoff MA (1940)
Peshkoff, M.A. "Phylogenics of new microbes Caryophanon latum and Caryophanon tenus - intermediate organisms between the Cyanophyceae and Bacteria." Zhurnal Obshchei Biologii (J. Gen. Biol., Moscow) (1940) 1:597-617. [No PubMed record available.]
Oscillospiraceae classification
The family Oscillospiraceae Peshkoff 1940 (type genus Oscillospira) is currently classified under order Lactobacillales, class Bacilli in the most recent taxonomic outline for Bergey's Manual of Systematic Bacteriology, second edition. However, there is no type strain for the type species Oscillospira guilliermondii. The work of Yanagita et al. (2003) indicates that this species is better classified within the order Eubacteriales (syn. Clostridiales), class Clostridia. Consequently, the family Oscillospiraceae is so classified within the NCBI taxonomy database pending final resolution of the matter.

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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