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Taxonomy browser (Cryptococcus neoformans)

Cryptococcus neoformans

Taxonomy ID: 5207 (for references in articles please use NCBI:txid5207)
current name
Cryptococcus neoformans (San Felice) Vuill., 1901
basionym:
Saccharomyces neoformans San Felice, 1895
homotypic synonym:
Torula neoformans (San Felice) J.D. Weis, 1902
Blastomyces neoformans (San Felice) Arzt, 1924
Torulopsis neoformans (San Felice) Redaelli, 1931
Debaryomyces neoformans (San Felice) Redaelli, Cif. & A. Giord., 1937
Lipomyces neoformans (San Felice) Cif., 1960
NCBI BLAST name: basidiomycete fungi
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 4 (Mold Mitochondrial; Protozoan Mitochondrial; Coelenterate Mitochondrial; Mycoplasma; Spiroplasma)
Other names:
heterotypic synonym
Filobasidiella neoformans Kwon-Chung, 1976
heterotypic synonym
Cryptococcus neoformans var. grubii Franzot et al., 1999
type material of Cryptococcus neoformans var. grubii: CBS:8710, NYSD:1649
includes:
Cryptococcus neoformans A
Filobasidiella neoformans serotype A
common name(s) Cryptococcus neoformans serotype A
Lineage( full )
cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 47,013 32,893 9,204
Protein 318,959 122,681 -
Structure 89 29 -
Conserved Domains 1 1 -
GEO Datasets 4,694 3,951 -
PubMed Central 17,914 17,914 -
Gene 8,380 40 -
SRA Experiments 11,807 9,570 -
Identical Protein Groups 84,941 45,118 -
BioProject 746 202 -
BioSample 11,221 9,304 965
Datasets Genome 183 153 -
PubChem BioAssay 1,991 1,917 -
Taxonomy 419 1 -

Comments and References:

Hagen F et al. (2015), doi:10.1016/j.fgb.2015.02.009
Hagen F, Khayhan K, Theelen B, Kolecka A, Polacheck I, Sionov E, Falk R, Parnmen S, Lumbsch HT, Boekhout T. 2015. Recognition of seven species in the Cryptococcus gattii/Cryptococcus neoformans species complex. Fungal Genet Biol 78:16-48.
image:Cryptococcus neoformans
Image from Wikimedia Commons under a Public Domain license.
* Image may not have been verified for accuracy by NCBI Taxonomy.
Kwon-Chung et al. (2017), doi:10.1128/mSphere.00357-16
Kwon-Chung K.J. et al. 2017. The Case for Adopting the “Species Complex” Nomenclature for the Etiologic Agents of Cryptococcosis. mSphere.
Boekhout et al. 2001
Boekhout, T. et al. 2001. Hybrid genotypes in the pathogenic yeast Cryptococcus neoformans. Microbiology 147: 891-907.
Diaz et al. 2000
Diaz, M.R., Boekhout, T., Theelen, B., and Fell, J.A. 2000. Molecular sequences analyses of the intergenic spacer (IGS) associated with rDNA of the two pathogenic varieties of the pathogenic yeast, Cryptococcus neoformans. System. Appl. Microbiol. 23: 535-545.

Genome Information

Go to NCBI genomic BLAST page for Cryptococcus neoformans
Genome view: 14 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11 12 13 14

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Cryptococcus neoformans (San Felice) Vuill. 1901 taxonomy/phylogenetic Encyclopedia of life
GOLD: 2 Organisms organism-specific Genomes On Line Database
Filobasidiella neoformans culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
2 records from this provider taxonomy/phylogenetic Index Fungorum
Cryptococcus neoformans (Sanfelice) Vuillemin taxonomy/phylogenetic Integrated Taxonomic Information System
Cryptococcus neoformans taxonomy/phylogenetic Lifemap
2 records from this provider taxonomy/phylogenetic MycoBank
2 records from this provider taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Filobasidiella neoformans taxonomy/phylogenetic TreeBase
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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