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Taxonomy browser (Bacillus velezensis)

Bacillus velezensis

Taxonomy ID: 492670 (for references in articles please use NCBI:txid492670)
current name
Bacillus velezensis Ruiz-Garcia et al. 2005
type strain of Bacillus velezensis: BCCM/LMG:22478, personal::CR-502, CECT:5686, CCUG:50740, KCTC:13102, NRRL:B-41580, BCRC:17467, KCTC:13012
not considered type of Bacillus velezensis: CECT:5687
homotypic synonym:
Bacillus sp. Lzh-5
includes:
Bacillus sp. 5RB
Bacillus sp. CBMB205
Bacillus sp. JJ-D34
Bacillus sp. KACC 18228
Bacillus sp. NRRL B-41580
Bacillus sp. NRRL B-4257
Bacillus sp. YC7007
Bacillus sp. YC7010
Bacillus sp. YJ11-1-4
Bacillus sp. B15(2023)
NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Bacillus methylotrophicus
homotypic synonym:
Bacillus methylotrophicus Madhaiyan et al. 2010 emend. Dunlap et al. 2015
current(original):
Bacillus methylotrophicus Madhaiyan et al. 2010
type strain of Bacillus methylotrophicus Madhaiyan et al. 2010: KACC:13105, NCCB:100236, personal::CBMB205, CMCB:205
heterotypic synonym
Bacillus amyloliquefaciens subsp. plantarum Borriss et al. 2011
type strain of Bacillus amyloliquefaciens subsp. plantarum: BGSC:10A6, DSM:23117, personal::FZB42
heterotypic synonym
"Bacillus oryzicola" Chung et al. 2015, effective name 1)
type strain of "Bacillus oryzicola": personal::YC7010, KACC:18228
heterotypic synonym
Bacillus methylotrophicus subsp. plantarum
includes
Bacillus subtilis GB03
Lineage( full )
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus amyloliquefaciens group
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 46,538 45,950 131
Protein 2,142,711 2,091,618 -
Structure 13 1 -
GEO Datasets 32 18 -
PubMed Central 1,826 1,722 -
Gene 43,540 7,864 -
SRA Experiments 1,086 1,006 -
Protein Clusters 1,870 1,870 -
Identical Protein Groups 357,613 354,572 -
BioProject 980 955 -
BioSample 2,128 1,766 294
Datasets Genome 1,301 1,285 -
Taxonomy 17 1 -

Notes:

Comments and References:

Borriss R et al. (2011)
Borriss, R., Chen, X.-H., Rueckert, C., Blom, J., Becker, A., Baumgarth, B., Fan, B., Pukall, R., Schumann, P., Sproer, C., Junge, H., Vater, J., Puhler, A., and Klenk, H.-P. "Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons." Int. J. Syst. Evol. Microbiol. (2011) 61:1786-1801.
Chung EJ et al. (2015b)
Chung, E.J., Hossain, M.T., Khan, A., Kim, K.H., Jeon, C.O., and Chung, Y.R. "Bacillus oryzicola sp. nov., an endophytic bacterium isolated from the roots of rice with antimicrobial, plant growth promoting, and systemic resistance inducing activities in rice." Plant Pathol. J. (2015) 31:152-164.
Madhaiyan M et al. (2010f)
Madhaiyan, M., Poonguzhali, S., Kwon, S.-W., and Sa, T.-M. "Bacillus methylotrophicus sp. nov. a methanol-utilizing, plant-growth-promoting bacterium isolated from rice rhizosphere soil." Int. J. Syst. Evol. Microbiol. (2010) 60:2490-2495.
Ruiz-Garcia C et al. (2005)
Ruiz-Garcia, C., Bejar, V., Martinez-Checa, F., Llamas, I,. and Quesada, E. "Bacillus velezensis sp. nov., a surfactant-producing bacterium isolated from the river Velez in Malaga, southern Spain." Int. J. Syst. Evol. Microbiol. (2005) 55:191-195. Published online 30 July 2004. doi:10.1099/ijs.0.63310-0. [N.B.: the type strain is listed as CECT 5686 in the abstract, but as CECT 5687 in the body of the text. CECT 5686 is apparently correct, according to the annotation at the CECT.]
Fan B et al. (2017)
Fan, B., Blom, J., Klenk, H.-P., and Borriss, R. "Bacillus amyloliquefaciens, Bacillus velezensis, and Bacillus siamensis form an 'Operational Group B. amyloliquefaciens' within the B. subtilis species complex." Front. Microbiol. (2017) 8:22.
Dunlap CA et al. (2016)
Dunlap, C.A., Kim, S.-J., Kwon, S.-W., and Rooney, A.P. "Bacillus velezensis is not a later heterotypic synonym of Bacillus amyloliquefaciens; Bacillus methylotrophicus, Bacillus amyloliquefaciens subsp. plantarum and 'Bacillus oryzicola' are later heterotypic synonyms of Bacillus velezensis based on phylogenomics." Int. J. Syst. Evol. Microbiol. (2016) 66:1212-1217.
Dunlap CA et al. (2015)
Dunlap, C.A., Kim, S.J., Kwon, S.W., and Rooney, A.P. "Phylogenomic analysis shows that Bacillus amyloliquefaciens subsp. plantarum is a later heterotypic synonym of Bacillus methylotrophicus." Int. J. Syst. Evol. Microbiol. (2015) 65:2104-2109.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Bacillus velezensis meta-databases BacDive - Free access to bacterial information database
84 records from this provider organism-specific BioCyc
GOLD: 240 Organisms organism-specific Genomes On Line Database
Bacillus methylotrophicus culture/stock collections Global Catalogue of Microorganisms
131 records from this provider organism-specific Integrated Microbial Genomes
Bacillus velezensis taxonomy/phylogenetic Lifemap
Bacillus velezensis | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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