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Taxonomy browser (Fungi)


Taxonomy ID: 4751 (for references in articles please use NCBI:txid4751)
Scientific name: Fungi
Genbank common name: fungi
Inherited blast name: eukaryotes
Rank: kingdom
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 4 (Mold Mitochondrial; Protozoan Mitochondrial; Coelenterate Mitochondrial; Mycoplasma; Spiroplasma)
Other names:
blast name: fungi
Lineage( full )
cellular organisms; Eukaryota; Opisthokonta
   Entrez records   
Database name Subtree links Direct links
Nucleotide 11,880,744 211
Protein 16,218,000 1
Structure 8,566 -
Genome 1,960 -
Popset 35,973 1,648
Conserved Domains 1,309 411
GEO Datasets 87,590 31
UniGene 55,184 -
PubMed Central 348,179 -
Gene 3,031,507 -
HomoloGene 8,813 -
SRA Experiments 147,890 724
GEO Profiles 1,081,065 -
Identical Protein Groups 10,424,530 1
Bio Project 19,820 45
Bio Sample 185,447 1,322
Bio Systems 25,266 -
Assembly 4,885 -
Clone DB 18,318 -
Probe 34,291 3
PubChem BioAssay 33,453 51
Taxonomy 158,096 1

Comments and References:

Moore (1980)
Moore RT. 1980. Taxonomic proposals for the classification of marine yeasts and other yeastlike fungi including the smuts. Botanica Marina 23: 361-373.

Reference to PubMed documentKeeling (2003)
Keeling PJ, 2003. Congruent evidence for alpha-tubulin and beta-tubulin gene phylogenies for a zygomycete origin of Microsporidia. Fungal Genetics and Biology 38: 298-309.

Reference to PubMed documentBaldauf et al. 2000
Baldauf SL, Roger AJ, Wenk-Siefert I, Doolittle WF, 2000. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290: 972-977.

Liu Y et al. 2006
Liu, Y., M. C. Hodson, and B. D. Hall. 2006. Loss of the flagellum happened only once in the fungal lineage: phylogenetic structure of kingdom Fungi inferred from RNA polymerase II subunit genes. BMC Evolutionary Biology 6:74.

James TY et al. 2006
James, T. Y., F. Kauff, C. Schoch, P. B. Matheny, V. Hofstetter, C. Cox, G. Celio, C. Gueidan, E. Fraker, J. Miadlikowska, H. T. Lumbsch, A. Rauhut, V. Reeb, A. E. Arnold, A. Amtoft, J. E. Stajich, K. Hosaka, G.-H. Sung, D. Johnson, B. O*Rourke, M. Crockett, M. Binder, J. M. Curtis, J. C. Slot, Z. Wang, A. W. Wilson, A. Schu*ler, J. E. Longcore, K. O*Donnell, S. Mozley-Standridge, D. Porter, P. M. Letcher, M. J. Powell, J. W. Taylor, M. M. White, G. W. Griffith, D. R. Davies, R. A. Humber, J. B. Morton, J. Sugiyama, A. Y. Rossman, J. D. Rogers, D. H. Pfister, D. Hewitt, K. Hansen, S. Hambleton, R. A. Shoemaker, J. Kohlmeyer, B. Volkmann-Kohlmeyer, R. A. Spotts, M. Serdani, P. W. Crous, K. W. Hughes, K. Matsuura, E. Langer, G. Langer, W. A. Untereiner, R. Lucking, B. Budel, D. M. Geiser, A. Aptroot, P. Diederich, I. Schmitt, M. Schultz, R. Yahr, D. Hibbett, F Lutzoni, D. McLaughlin, J. Spatafora, and R. Vilgalys. 2006a. Reconstructing the early evolution of the fungi using a six gene phylogeny. Nature 443: 818-822.

Nota BeneSpatafora et al. (2017)
Spatafora J.W. et al. 2017. The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies. Microbiol Spectrum 5(5):FUNK-0053-2016.

External Information Resources (NCBI LinkOut)

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Fungi taxonomy taxonomy/phylogenetic Arctos Specimen Database
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Fungi culture/stock collections Global Catalogue of Microorganisms
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12 records from this provider taxonomy/phylogenetic NCBI taxonomy bookmarks
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

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