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Taxonomy browser (Fungi)

Fungi

Taxonomy ID: 4751 (for references in articles please use NCBI:txid4751)
current name
Fungi
Genbank common name: fungi
NCBI BLAST name: fungi
Rank: kingdom
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 4 (Mold Mitochondrial; Protozoan Mitochondrial; Coelenterate Mitochondrial; Mycoplasma; Spiroplasma)
Other names:
blast name
fungi
Lineage( full )
cellular organisms; Eukaryota; Opisthokonta
   Entrez records   
Database name Subtree links Direct links
Nucleotide 12,218,770 211
Protein 17,930,481 1
Structure 8,826 -
Genome 2,107 -
Popset 37,614 1,663
Conserved Domains 1,378 433
GEO Datasets 90,466 31
UniGene 55,184 -
PubMed Central 379,797 -
Gene 3,125,617 -
HomoloGene 8,813 -
SRA Experiments 162,021 2,268
GEO Profiles 1,081,065 -
Identical Protein Groups 11,599,298 1
Bio Project 21,881 52
Bio Sample 197,232 2,898
Bio Systems 25,266 -
Assembly 5,387 -
Probe 34,289 3
PubChem BioAssay 33,453 51
Taxonomy 160,450 1

Comments and References:

Moore (1980)
Moore RT. 1980. Taxonomic proposals for the classification of marine yeasts and other yeastlike fungi including the smuts. Botanica Marina 23: 361-373.
Keeling (2003)
Keeling PJ, 2003. Congruent evidence for alpha-tubulin and beta-tubulin gene phylogenies for a zygomycete origin of Microsporidia. Fungal Genetics and Biology 38: 298-309.
Baldauf et al. 2000
Baldauf SL, Roger AJ, Wenk-Siefert I, Doolittle WF, 2000. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290: 972-977.
Liu Y et al. 2006
Liu, Y., M. C. Hodson, and B. D. Hall. 2006. Loss of the flagellum happened only once in the fungal lineage: phylogenetic structure of kingdom Fungi inferred from RNA polymerase II subunit genes. BMC Evolutionary Biology 6:74.
James TY et al. 2006
James, T. Y., F. Kauff, C. Schoch, P. B. Matheny, V. Hofstetter, C. Cox, G. Celio, C. Gueidan, E. Fraker, J. Miadlikowska, H. T. Lumbsch, A. Rauhut, V. Reeb, A. E. Arnold, A. Amtoft, J. E. Stajich, K. Hosaka, G.-H. Sung, D. Johnson, B. O*Rourke, M. Crockett, M. Binder, J. M. Curtis, J. C. Slot, Z. Wang, A. W. Wilson, A. Schu*ler, J. E. Longcore, K. O*Donnell, S. Mozley-Standridge, D. Porter, P. M. Letcher, M. J. Powell, J. W. Taylor, M. M. White, G. W. Griffith, D. R. Davies, R. A. Humber, J. B. Morton, J. Sugiyama, A. Y. Rossman, J. D. Rogers, D. H. Pfister, D. Hewitt, K. Hansen, S. Hambleton, R. A. Shoemaker, J. Kohlmeyer, B. Volkmann-Kohlmeyer, R. A. Spotts, M. Serdani, P. W. Crous, K. W. Hughes, K. Matsuura, E. Langer, G. Langer, W. A. Untereiner, R. Lucking, B. Budel, D. M. Geiser, A. Aptroot, P. Diederich, I. Schmitt, M. Schultz, R. Yahr, D. Hibbett, F Lutzoni, D. McLaughlin, J. Spatafora, and R. Vilgalys. 2006a. Reconstructing the early evolution of the fungi using a six gene phylogeny. Nature 443: 818-822.
Spatafora et al. (2017), doi:10.1128/microbiolspec.FUNK-0053-2016
Spatafora J.W. et al. 2017. The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies. Microbiol Spectrum 5(5):FUNK-0053-2016.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Fungi taxonomy taxonomy/phylogenetic Arctos Specimen Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Fungi culture/stock collections Global Catalogue of Microorganisms
Fungi taxonomy/phylogenetic Integrated Taxonomic Information System
Fungi taxonomy/phylogenetic Lifemap
Fungi taxonomy/phylogenetic MycoBank
12 records from this provider taxonomy/phylogenetic NCBI taxonomy bookmarks
ToL taxonomy/phylogenetic Tree of Life
Fungi taxonomy/phylogenetic TreeBase
UCMP taxonomy/phylogenetic UCMP phylogeny exhibit
Fungi taxonomy/phylogenetic World Register of Marine Species
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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