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Taxonomy browser (Zea mays)

Zea mays

Taxonomy ID: 4577 (for references in articles please use NCBI:txid4577)
Scientific name: Zea mays L.
Inherited blast name: monocots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
synonym: Zea mays var. japonica
common name: maize
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
   Entrez records   
Database name Subtree links Direct links
Nucleotide 1,836,306 1,759,814
Nucleotide EST 20,086 20,086
Nucleotide GSS 2,099,050 1,622,795
Protein 325,413 316,799
Structure 186 185
Genome 1 1
Popset 517 376
Conserved Domains 1 1
GEO Datasets 11,807 11,603
UniGene 92,052 92,052
PubMed Central 17,757 17,755
Gene 66,975 66,689
SRA Experiments 27,740 24,869
GEO Profiles 36,480 36,480
Protein Clusters 94 94
Identical Protein Groups 185,729 183,899
Bio Project 4,252 4,118
Bio Sample 43,958 41,486
Bio Systems 268 268
Assembly 43 11
Clone DB 1,144,901 1,144,901
Probe 58,068 58,036
PubChem BioAssay 415 415
Taxonomy 6 1

Comments and References:

Nota BeneGRIN (Sept 28, 2007)
Name verified on 28 September 2007 in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.

Nota BeneSoreng RJ et al. 2003 & on
Soreng RJ, G Davidse, PM Peterson, FO Zuloaga, EJ Judziewicz, TS Filgueiras & O Morrone 2003 and onwards. On-line taxonomic novelties and updates, distributional additions and corrections, and editorial changes since the four published volumes of the Catalogue of New World Grasses (Poaceae) published in Contributions from the United States National Herbarium Vols. 39, 41, 46, and 48. Internet Catalogue of New World Grasses http://www.tropicos.org/Project/CNWG


Genome Information

Go to NCBI genomic BLAST page for Zea mays
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
454 CLONEEND EST OTHER PCR PRIMERWALK RT-PCR SHOTGUN TRANSPOSON WGS ALL
AGI - Arizona Genomics Institute
- 207,212 366,389 - - - - - - - 573,601
BI - Broad Insititute
- - - 18 - - - 678,010 768 - 678,796
CUGI - Clemson University Genomics Institute
- - - - - - - 27,936 - - 27,936
INDIVIDUAL - Direct submission from individual investigator
- - - - - - - 318 - - 318
ISUCPG - Iowa State University Center for Plant Genomics
288,992 - 65,500 - - - - - - - 354,492
JCVI - J. Craig Venter Institute
- 120,504 - - - - - 1,210,000 - 51,493 1,381,997
JGI - Joint Genome Institute, U.S. Department of Energy
- - - - - - - - - 1,124,441 1,124,441
PGIR - Plant Genome Initiative at Rutgers
- 282,718 - - - - - 42,595 - - 325,313
SGTC - Stanford Genome Technology Center
- - - - - - - - 133,873 - 133,873
TIGR - The Institute for Genome Research
- - - - - - - 6,398 - - 6,398
WU-LCG - Washington University Laboratory for Computational Genomics
- - - - - - 160 - - - 160
WUGSC - Washington University, Genome Sequencing Center
- 1,116,285 - - 151,675 1,121,853 - 27,518,286 - - 29,908,099
Totals per type
288,992 1,726,719 431,889 18 151,675 1,121,853 160 29,483,543 134,641 1,175,934 34,515,424

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Zea mays taxonomy taxonomy/phylogenetic Arctos Specimen Database
dryaddb supplemental materials Dryad Digital Repository
Zea mays L. taxonomy/phylogenetic Encyclopedia of life
378 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
Zea mays L. taxonomy/phylogenetic Integrated Taxonomic Information System
Zea mays taxonomy/phylogenetic Lifemap
2 records from this provider taxonomy/phylogenetic NCBI taxonomy bookmarks
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
2 records from this provider taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
corn nematodes taxonomy/phylogenetic Plant and Insect Parasitic Nematodes
Zea mays taxonomy/phylogenetic The International Plant Names Index
USDAcgc organism-specific USDA Crop Germplasm Committee Reports
3 records from this provider taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
2 records from this provider organism-specific WebScipio - eukaryotic gene identification
4 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Zea mays taxonomy/phylogenetic electronic Plant Information Centre
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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