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Taxonomy browser (Zea mays)

Zea mays

Taxonomy ID: 4577
Inherited blast name: monocots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Other names:
synonym: Zea mays var. japonica
common name: maize
authority: Zea mays L.
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
   Entrez records   
Database name Subtree links Direct links
Nucleotide 703,101 630,797
Nucleotide EST 2,019,896 2,019,896
Nucleotide GSS 2,099,071 1,622,816
Protein 280,369 272,889
Structure 165 164
Genome 1 1
Popset 491 357
SNP 60,009,738 60,009,738
Domains 1 1
GEO Datasets 10,815 10,614
UniGene 92,052 92,052
PubMed Central 15,384 15,382
Gene 64,543 64,258
SRA Experiments 12,155 9,588
Probe 58,068 58,036
Assembly 12 8
Bio Project 886 781
Bio Sample 33,728 31,378
Bio Systems 268 268
Clone DB 1,144,901 1,144,901
GEO Profiles 36,480 36,480
PubChem BioAssay 415 415
Protein Clusters 92 92
Taxonomy 6 1

Comments and References:

Nota BeneGRIN (Sept 28, 2007)
Name verified on 28 September 2007 in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.

Nota BeneSoreng RJ et al. 2003 & on
Soreng RJ, G Davidse, PM Peterson, FO Zuloaga, EJ Judziewicz, TS Filgueiras & O Morrone 2003 and onwards. On-line taxonomic novelties and updates, distributional additions and corrections, and editorial changes since the four published volumes of the Catalogue of New World Grasses (Poaceae) published in Contributions from the United States National Herbarium Vols. 39, 41, 46, and 48. Internet Catalogue of New World Grasses http://www.tropicos.org/Project/CNWG


Genome Information

Go to NCBI genomic BLAST page for Zea mays
See the NCBI Genome map in MapViewer
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
454 CLONEEND EST OTHER PCR PRIMERWALK RT-PCR SHOTGUN TRANSPOSON WGS ALL
AGI - Arizona Genomics Institute
- 207,212 366,389 - - - - - - - 573,601
BI - Broad Insititute
- - - 18 - - - 678,010 768 - 678,796
CUGI - Clemson University Genomics Institute
- - - - - - - 27,936 - - 27,936
INDIVIDUAL - Direct submission from individual investigator
- - - - - - - 318 - - 318
ISUCPG - Iowa State University Center for Plant Genomics
288,992 - 65,500 - - - - - - - 354,492
JCVI - J. Craig Venter Institute
- 120,504 - - - - - 1,210,000 - 51,493 1,381,997
JGI - Joint Genome Institute, U.S. Department of Energy
- - - - - - - - - 1,124,441 1,124,441
PGIR - Plant Genome Initiative at Rutgers
- 282,718 - - - - - 42,595 - - 325,313
SGTC - Stanford Genome Technology Center
- - - - - - - - 133,873 - 133,873
TIGR - The Institute for Genome Research
- - - - - - - 6,398 - - 6,398
WU-LCG - Washington University Laboratory for Computational Genomics
- - - - - - 160 - - - 160
WUGSC - Washington University, Genome Sequencing Center
- 1,116,285 - - 151,675 1,121,853 - 27,518,286 - - 29,908,099
Totals per type
288,992 1,726,719 431,889 18 151,675 1,121,853 160 29,483,543 134,641 1,175,934 34,515,424

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Zea mays taxonomy taxonomy/phylogenetic Arctos Specimen Database
dryaddb supplemental materials Dryad Digital Repository
Zea mays L. taxonomy/phylogenetic Encyclopedia of life
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Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
Zea mays L. taxonomy/phylogenetic Integrated Taxonomic Information System
MaizeGDB - Maize Genetics & Genomics Database taxonomy/phylogenetic NCBI taxonomy bookmarks
Panzea - Genetic Architecture of Maize taxonomy/phylogenetic
Zea mays subsp. mays taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Zea mays taxonomy/phylogenetic
corn nematodes taxonomy/phylogenetic Plant and Insect Parasitic Nematodes
Zea mays taxonomy/phylogenetic The International Plant Names Index
Zea mays taxonomy/phylogenetic TreeBase
USDAcgc organism-specific USDA Crop Germplasm Committee Reports
Zea mays L. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
Zea mays subsp. mays taxonomy/phylogenetic
Zea mays var. japonica (Van Houtte) Alph. Wood taxonomy/phylogenetic
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Zea mays organism-specific WebScipio - eukaryotic gene identification
WebScipio: Zea mays Palomero organism-specific
diArk: Zea mays B73 organism-specific diArk a resource for eukaryotic genome research
diArk: Zea mays Z59 organism-specific
diArk: Zea mays Palomero organism-specific
diArk: Zea mays organism-specific
Zea mays taxonomy/phylogenetic electronic Plant Information Centre
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

Show organism modifiers


Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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