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Taxonomy browser (Sorghum bicolor)

Sorghum bicolor

Taxonomy ID: 4558 (for references in articles please use NCBI:txid4558)
Scientific name: Sorghum bicolor
current: Sorghum bicolor
Genbank common name: sorghum
Inherited blast name: monocots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
synonym: Andropogon sorghum
 
current: Andropogon sorghum
synonym: Sorghum bicolor subsp. bicolor
synonym: Sorghum nervosum
 
current: Sorghum nervosum
synonym: Sorghum saccharatum
 
current: Sorghum saccharatum
synonym: Sorghum vulgare
 
current: Sorghum vulgare
common name: broomcorn
common name: milo
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
   Entrez records   
Database name Direct links
Nucleotide 71,066
Nucleotide EST 209,835
Nucleotide GSS 804,473
Protein 93,050
Structure 13
Genome 1
Popset 527
GEO Datasets 673
UniGene 13,733
PubMed Central 4,720
Gene 41,279
SRA Experiments 5,682
Protein Clusters 17,076
Identical Protein Groups 54,515
Bio Project 1,060
Bio Sample 4,508
Bio Systems 245
Assembly 11
Clone DB 103,820
Probe 10,889
PubChem BioAssay 37
Taxonomy 1

Comments and References:

Nota BeneAPNI (Nov 21, 2013)
Name accessed on 21 November 2013 in: The Australian Plant Name Index (Centre for Plant Biodiversity Research, Australian National Herbarium, Australian National Botanic Gardens and the Australian Biological Resources Study).

Nota BeneAustralian Plant Census
Australian Plant Census (APC) - Council of Heads of Australasian Herbaria.

Nota BeneTROPICOS (Sept 27, 2007)
Name verified on 27 September 2007, in: W3TROPICOS, the Missouri Botanical Garden's VAST (VAScular Tropicos) nomenclatural database, vers. 1.5, Missouri Botanical Garden, St. Louis, MO, 63166-0299, USA.

Nota BeneGRIN (Sept 23, 2009)
Name verified on 23 September 2009 in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.

Nota BeneAfrican Plant Database (Nov 21, 2013)
Name accessed on 21 November 2013 in: African Flowering Plant Database (version 3.1). Conservatoire et Jardin botaniques de la Villle de Geneve and South African National Biodiversity Institute, Pretoria, retrieved from http://www.ville-ge.ch/musinfo/bd/cjb/africa

Wiersema J.H & Dahlberg J 2007
Wiersema JH and Dahlberg. J 2007. The nomenclature of Sorghum bicolor (L.) Moench (Gramineae). Taxon 56(3): 941-946.

Barkworth ME et al. 2003
Barkworth ME, Capels KM, Long S and Piep MB (Eds.) 2003. Flora of North America North of Mexico, Vol. 25: Magnoliophyta: Commelinidae (in part): Poaceae, part 2. Oxford University Press, New York, Oxford, pp. 1-783.


Genome Information

Go to NCBI genomic BLAST page for Sorghum bicolor
Genome view: 11 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 Pltd
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CLONEEND EST MF WGS ALL
HPGC - Albert Einstein College of Medicine
- - 96 - 96
JGI - Joint Genome Institute, U.S. Department of Energy
7,382 - - 10,540,078 10,547,460
OG - Orion Genomics
- - 604,468 - 604,468
SHGC - Stanford Human Genome Center
203,769 - - - 203,769
UGALGB - Laboratory for Genomics and Bioinformatics, University of Georgia
- 123,352 - - 123,352
UOKNOR - University of Oklahoma Norman Campus, Advanced Center for Genome Technology
- - - 15,889 15,889
Totals per type
211,151 123,352 604,564 10,555,967 11,495,034

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Sorghum bicolor taxonomy taxonomy/phylogenetic Arctos Specimen Database
Sorghum bicolor taxonomy/phylogenetic CalPhotos
dryaddb supplemental materials Dryad Digital Repository
Sorghum bicolor (L.) Moench taxonomy/phylogenetic Encyclopedia of life
189 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
2507525011: Sorghum bicolor BTx623 organism-specific Integrated Microbial Genomes
2 records from this provider taxonomy/phylogenetic Integrated Taxonomic Information System
Sorghum bicolor taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
2 records from this provider taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
2 records from this provider taxonomy/phylogenetic The International Plant Names Index
2 records from this provider taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Sorghum bicolor organism-specific WebScipio - eukaryotic gene identification
4 records from this provider organism-specific diArk - a resource for eukaryotic genome research
3 records from provider taxonomy/phylogenetic electronic Plant Information Centre
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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