Link to NCBI Front Page Taxonomy Logo
Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy Books
Taxonomy browser (Secale cereale)

Secale cereale

Taxonomy ID: 4550 (for references in articles please use NCBI:txid4550)
Scientific name: Secale cereale L.
homotypic synonym: Secale cereale subsp. cereale
Genbank common name: rye
Inherited blast name: monocots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Secale
   Entrez records   
Database name Subtree links Direct links
Nucleotide 48,655 48,274
Nucleotide EST 9,304 9,304
Nucleotide GSS 9,284 9,284
Protein 1,336 1,275
Structure 6 6
Genome 1 1
Popset 198 194
GEO Datasets 37 37
PubMed Central 1,160 1,155
Gene 111 111
SRA Experiments 675 594
Identical Protein Groups 742 709
Bio Project 27 27
Bio Sample 654 575
Assembly 2 2
Clone DB 1,432 1,432
Probe 1,091 1,091
PubChem BioAssay 77 77
Taxonomy 8 1

Comments and References:

Nota BeneGRIN (Nov 25, 2013)
Name accessed on 25 November 2013 in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.

Nota BeneAfrican Plant Database (Nov 25, 2013)
Name accessed on 25 November 2013 in: African Flowering Plant Database (version 3.1). Conservatoire et Jardin botaniques de la Villle de Geneve and South African National Biodiversity Institute, Pretoria, retrieved from

Nota BeneEuro+Med Plantbase
Name verified on date of entry into database in: The Euro+Med Plantbase - the information resource for Euro-Mediterranean plant diversity. W. Greuter (Ed.) Botanic Garden and Botanical Museum Berlin-Dahlem.

Nota BeneChikmawati T et al. 2005
Chikmawati T, Skovmand B and Gustafson JP. 2005. Phylogenetic relationships among Secale species revealed by amplified fragment length polymorphisms. Genome 48: 792-801. DOI:

Genome Information

Go to NCBI genomic BLAST page for Secale cereale
Genome view: 8 chromosomes
Names 1R 2R 3R 4R 5R 6R 7R Pltd

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Secale cereale taxonomy taxonomy/phylogenetic Arctos Specimen Database
Secale cereale L. taxonomy/phylogenetic Encyclopedia of life
3 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
Secale cereale L. taxonomy/phylogenetic Integrated Taxonomic Information System
GrainGenes taxonomy/phylogenetic NCBI taxonomy bookmarks
2 records from this provider taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Secale cereale taxonomy/phylogenetic The International Plant Names Index
Secale cereale taxonomy/phylogenetic TreeBase
2 records from this provider taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Secale cereale organism-specific WebScipio - eukaryotic gene identification
diArk: Secale cereale organism-specific diArk - a resource for eukaryotic genome research
Secale cereale taxonomy/phylogenetic electronic Plant Information Centre
Wikipedia taxonomy/phylogenetic iPhylo
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Show organism modifiers

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Comments and questions to

[Help] [Search] [NLM NIH] [Disclaimer]