Link to NCBI Front Page Taxonomy Logo
Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy Books
   
Taxonomy browser (Oryza)

Oryza

Taxonomy ID: 4527 (for references in articles please use NCBI:txid4527)
Scientific name: Oryza L., 1753
includes: Porteresia
Inherited blast name: monocots
Rank: genus
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 461,379 21
Nucleotide EST 1,343,982 -
Nucleotide GSS 2,967,314 -
Protein 399,856 2
Structure 191 -
Genome 23 -
Popset 1,512 1,059
Conserved Domains 19 -
GEO Datasets 16,437 -
UniGene 44,118 -
PubMed Central 21,523 21,497
Gene 124,547 -
HomoloGene 9,787 -
SRA Experiments 56,833 30
GEO Profiles 670,939 -
Protein Clusters 15,565 -
Identical Protein Groups 207,636 2
Bio Project 3,758 11
Bio Sample 70,436 17
Bio Systems 1,520 -
Assembly 60 -
Clone DB 1,090,335 -
Probe 186,381 46
PubChem BioAssay 470 -
Taxonomy 84 1

Comments and References:

Nota BeneFlora of China - Poaceae
Chen S-L et al. 2006. Poaceae (R. Brown) Barnhart. In Wu, Z. Y., P. H. Raven & D. Y. Hong, eds. Flora of China. Vol. 22 (Poaceae). Science Press, Beijing, and Missouri Botanical Garden Press, St. Louis. Online at Flora of China: www.efloras.org

Nota BeneSoreng RJ et al. 2015a
Soreng RJ, Peterson PM, Romaschenko K, Davidse G, Zuloaga FO, Judziewicz EJ, Filgueiras TS, Davis JI & Morrone O. 2015. A worldwide phylogenetic classification of the Poaceae (Gramineae). Journal of Systematics and Evolution 53(2): 117-137. Article first published online: 23 Mar 2015. DOI: http://dx.doi.org/10.1111/jse.12150

Ge S et al. 2002
Ge S, Li A, Lu B-R, Zhang S-Z, and Hong D-Y. 2002. A phylogeny of the rice tribe Oryzeae (Poaceae) based on matK sequence data. Amer. J. Botany 89: 1967-1972.

Aggarwal RK et al. 1999
Aggarwal RK, Brar DS, Nandi S, Huang N, and Khush GS. 1999. Phylogenetic relationships among Oryza species revealed by AFLP markers. Theor. Appl. Genetics 98: 1320-1320.

Nota BeneTROPICOS (Aug 27, 2015)
Name accessed on 27 August 2015 in: Tropicos.org. Missouri Botanical Garden, 2008 - 4344 Shaw Boulevard, Saint Louis, Missouri 63110, U.S.A. on line at: http://www.tropicos.org/


External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Oryza taxonomy taxonomy/phylogenetic Arctos Specimen Database
Oryza taxonomy/phylogenetic Encyclopedia of life
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
search ING taxonomy/phylogenetic Index Nominum Genericorum
Oryza L. taxonomy/phylogenetic Integrated Taxonomic Information System
Oryza taxonomy/phylogenetic Lifemap
Oryza taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
2 records from this provider taxonomy/phylogenetic The International Plant Names Index
Oryza taxonomy/phylogenetic TreeBase
2 records from this provider taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
2 records from this provider taxonomy/phylogenetic electronic Plant Information Centre
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


Comments and questions to info@ncbi.nlm.nih.gov

[Help] [Search] [NLM NIH] [Disclaimer]