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Taxonomy browser (Dikarya)

Dikarya

Taxonomy ID: 451864 (for references in articles please use NCBI:txid451864)
current name
Dikarya
NCBI BLAST name: fungi
Rank: subkingdom
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 4 (Mold Mitochondrial; Protozoan Mitochondrial; Coelenterate Mitochondrial; Mycoplasma; Spiroplasma)
Lineage( full )
cellular organisms; Eukaryota; Opisthokonta; Fungi
   Entrez records   
Database name Subtree links Direct links
Nucleotide 10,955,232 -
Protein 17,541,543 -
Structure 8,866 -
Genome 2,042 -
Popset 35,601 3,033
Conserved Domains 912 347
GEO Datasets 93,364 -
PubMed Central 389,584 389
Gene 3,110,084 -
HomoloGene 8,813 -
SRA Experiments 162,791 -
GEO Profiles 1,081,065 -
Identical Protein Groups 11,079,216 -
Bio Project 22,271 -
Bio Sample 200,202 -
Bio Systems 24,807 -
Assembly 5,599 -
Probe 34,224 -
PubChem BioAssay 32,437 -
Taxonomy 145,844 1

Comments and References:

Hibbett et al. (2007)
Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, Eriksson OE Huhndorg S, James T, Kirk PM, Lucking R, Lumbsch T, Lutzoni F, Matheny PB, McLaughlin D, Powell MJ, Redhead S, Schoch CL, Spatafora JW, Stalpers JA, Vilgalys R, Aime CA, Aptroot A, Bauer R, Begerow D, Benny GL, Castlebury LA, Crous PW, Dai Y-C, Gams W, Geiser DM, Griffith GW, Gueidan C, Hawksworth DL, Hestmark G, Hosaka K, Humber RA, Hyde K, Ironside JE, Koljalg U, Kurtzman CP, Larrson K-H, Lichtwardt R, Longcore J, Mia Klikowska J, Miller A, Moncalvo J-M, Mozley-Standridge S, Oberwinkler F, Parmasto E, Reeb V, Rodgers JD, Roux C, Ryvarden L, Sampaio JP< Schussler A, Sugiyama J, Thorn RG, Tibell L, Untereiner WA, Walker C, Wang Z, Weir A, Weiss M, White MM, Winka K, Yao Y-J, Zhang N. 2007. A higher-level phylogenetic classification of the Fungi. Mycological Research 111: 509-547.
James et al. (2006)
James TY, Kauff F, Schoch CL, Matheny PB, Hofstetter V, Cox C, Celio G, Gueidan C, Fraker E, Miadlikowska J, Lumbsch HT, Rauhut A, Reeb V, Arnold EA, Amtoft A, Stajich JE, Hosaka K, Sung G-H, Johnson D, O'Rourke B, Crockett M, Binder M, Curtis JM, Slot JC, Wang Z, Wilson AW, Schler A, Longcore JE, O'Donnell K, Mozley-Standridge S, Porter D, Letcher PM, Powell MJ, Taylor JW, White MM, Griffith GW, Davies DR, Humber RA, Morton J, Sugiyama J, Rossman AY, Rogers JD, Pfister DH, Hewitt D, Hansen K, Hambleton S, Shoemaker RA, Kohlmeyer J, Volkmann-Kohlmeyer B, Spotts RA, Serdani M, Crous PW, Hughes KW, Matsuura K, Langer E, Langer G, Untereiner WA, Lcking R, Bdel B, Geiser DM, Aptroot A, Diederich P, Schmitt I, Schultz M, Yahr R, Hibbett DS, Lutzoni F, McLaughlin D, Spatafora J, Vilgalys R, 2006. Reconstructing the early evolution of the fungi using a six gene phylogeny. Nature 443: 818-822.
Steenkamp et al. (2006)
Stennkamp ET, Wright J, Baldauf SL. 2006. The protistan origins of animals and fungi. Molecular Biology and Evolution 23: 93-106.
Seif et al. (2005)
Seif E, Leigh L, Roewer I, Forget L, Lang BF, 2005. Comparative mitochondrial genomics in zygomycetes: bacteria-like RNase P RNAs, mobile elements and a close source of the group I intron invasion in angiosperms. Nucleic Acids Research 33: 734-744.
Liu YJ et al. (2006)
Liu YJ, Hodson MC, Hall BD, 2006. Loss of the flagellum happened only once in the fungal lineage: phylogenetic structure of kingdom Fungi inferred from RNA polymerase II subunit genes. BMC Evolutionary Biology 6: 74.
Liu Y et al. 2006
Liu, Y., M. C. Hodson, and B. D. Hall. 2006. Loss of the flagellum happened only once in the fungal lineage: phylogenetic structure of kingdom Fungi inferred from RNA polymerase II subunit genes. BMC Evolutionary Biology 6:74.
James TY et al. 2006
James, T. Y., F. Kauff, C. Schoch, P. B. Matheny, V. Hofstetter, C. Cox, G. Celio, C. Gueidan, E. Fraker, J. Miadlikowska, H. T. Lumbsch, A. Rauhut, V. Reeb, A. E. Arnold, A. Amtoft, J. E. Stajich, K. Hosaka, G.-H. Sung, D. Johnson, B. O*Rourke, M. Crockett, M. Binder, J. M. Curtis, J. C. Slot, Z. Wang, A. W. Wilson, A. Schu*ler, J. E. Longcore, K. O*Donnell, S. Mozley-Standridge, D. Porter, P. M. Letcher, M. J. Powell, J. W. Taylor, M. M. White, G. W. Griffith, D. R. Davies, R. A. Humber, J. B. Morton, J. Sugiyama, A. Y. Rossman, J. D. Rogers, D. H. Pfister, D. Hewitt, K. Hansen, S. Hambleton, R. A. Shoemaker, J. Kohlmeyer, B. Volkmann-Kohlmeyer, R. A. Spotts, M. Serdani, P. W. Crous, K. W. Hughes, K. Matsuura, E. Langer, G. Langer, W. A. Untereiner, R. Lucking, B. Budel, D. M. Geiser, A. Aptroot, P. Diederich, I. Schmitt, M. Schultz, R. Yahr, D. Hibbett, F Lutzoni, D. McLaughlin, J. Spatafora, and R. Vilgalys. 2006a. Reconstructing the early evolution of the fungi using a six gene phylogeny. Nature 443: 818-822.
Spatafora et al. (2017), doi:10.1128/microbiolspec.FUNK-0053-2016
Spatafora J.W. et al. 2017. The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies. Microbiol Spectrum 5(5):FUNK-0053-2016.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Dikarya taxonomy/phylogenetic Lifemap
Dikarya Hibbett, T.Y. James & Vilgalys taxonomy/phylogenetic MycoBank
Wikipedia taxonomy/phylogenetic iPhylo
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