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Taxonomy browser (Paenibacillus)


Taxonomy ID: 44249 (for references in articles please use NCBI:txid44249)
current name
Paenibacillus Ash et al. 1994 emend. Huang et al. 2017
homotypic synonym:
Paenibacillus Ash et al. 1994 emend. Shida et al. 1997
Paenibacillus Ash et al. 1994 emend. Behrendt et al. 2010
NCBI BLAST name: firmicutes
Rank: genus
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Bacillus polymyxa group
heterotypic synonym
rRNA group 3 bacilli
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Bacillales; Paenibacillaceae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 191,915 31
Protein 6,246,704 259,067
Structure 194 2
Genome 267 1
Popset 1,698 1,641
Conserved Domains 3 1
GEO Datasets 52 -
PubMed Central 7,771 6,912
Gene 256,353 -
SRA Experiments 1,575 21
Protein Clusters 21,882 7,191
Identical Protein Groups 3,955,177 258,618
BioProject 997 13
BioSample 2,370 23
Assembly 1,081 -
PubChem BioAssay 20 -
Taxonomy 4,697 1

Comments and References:

Paenibacillus (LPSN link)
Achouak W et al. (1999b)
Achouak, W., Normand, P., and Heulin, T. "Comparative phylogeny of rrs and nifH genes in the Bacillaceae." Int. J. Syst. Bacteriol. (1999) 49:961-967.
Ash C et al. (1993)
Ash, C., Priest, F.G., and Collins, M.D. "Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus." Antonie van Leeuwenhoek J. Microbiol. Serol. (1993) 64:253-260.
Behrendt U et al. (2010)
Behrendt, U., Schumann, P., Stieglmeier, M., Pukall, R., Augustin, J., Sproer, C., Schwendner, P., Moissl-Eichinger, C., and Ulrich, A. "Characterization of heterotrophic nitrifying bacteria with respiratory ammonification and denitrification activity--description of Paenibacillus uliginis sp. nov., an inhabitant of fen peat soil and Paenibacillus purispatii sp. nov., isolated from a spacecraft assembly clean room." Syst. Appl. Microbiol. (2010) 33:328-336.
Huang Z et al. (2017)
Huang, Z., Zhao, F., and Li, Y.-H. "Isolation of Paenibacillus tumbae sp. nov., from the tomb of the emperor Yang of the Sui dynasty, and emended description of the genus Paenibacillus." Antonie van Leeuwenhoek (2017) 110:357-364.
Judicial Commision of the International Committee on Systematics of Prokaryotes: "The type species of the genus Paenibacillus Ash et al. 1994 is Paenibacillus polymyxa. Opinion 77." Int. J. Syst. Evol. Microbiol. (2005) 55:513.
List of Changes in Taxonomic Opinion No. 13 (2011), other link:
Euzeby, J.P. "Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2011) 61:6-7.
Reva ON et al. (2001)
Reva, O.N., Sorokulova, I.B., and Smirnov, V.V. "Simplified technique for identification of the aerobic spore-forming bacteria by phenotype." Int. J. Syst. Evol. Microbiol. (2001) 51:1361-1371.
Shida O et al. (1997)
Shida, O., Takagi, H., Kadowaki, K., Nakamura, L.K., and Komagata, K. "Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus." Int. J. Syst. Bacteriol. (1997) 47:289-298.
Tindall BJ (2000)
Tindall, B.J. "What is the type species of the genus Paenibacillus? Request for an opinion." Int. J. Syst. Evol. Microbiol. (2000) 50:939-940.
VALIDATION LIST No. 51. Int. J. Syst. Bacteriol. (1994) 44:852. [Erratum: Int. J. Syst. Bacteriol. (1995) 45:201.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Paenibacillus taxonomy/phylogenetic Encyclopedia of life
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
13 records from this provider organism-specific Integrated Microbial Genomes
Paenibacillus taxonomy/phylogenetic Lifemap
LBSN taxonomy/phylogenetic List of Bacterial names with Standing in Nomenclature
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Paenibacillus Ash, Priest & Collins, 1994 taxonomy/phylogenetic World Register of Marine Species
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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