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Taxonomy browser (Escherichia coli SMS-3-5)

Escherichia coli SMS-3-5

Taxonomy ID: 439855 (for references in articles please use NCBI:txid439855)
Scientific name: Escherichia coli SMS-3-5
Inherited blast name: enterobacteria
Rank: no rank
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
equivalent name: Escherichia coli str. SMS-3-5
equivalent name: Escherichia coli strain SMS-3-5
Lineage( abbreviated )
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
   Entrez records   
Database name Direct links
Nucleotide 13
Protein 10,601
Genome 1
Gene 5,129
Identical Protein Groups 5,775
Bio Project 2
Bio Sample 1
Bio Systems 324
Assembly 1
Probe 2
Taxonomy 1

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.

Reference to PubMed documentFricke WF et al. (2008)
Fricke, W.F., Wright, M.S., Lindell, A.H., Harkins, D.M., Baker-Austin, C., Ravel, J., and Stepanauskas, R. "Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate E. coli SMS-3-5." J. Bacteriol. (2008) 190:6779-6794.


Genome Information

See the TRACE Assembly
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
PRIMERWALK WGS ALL
JCVI - J. Craig Venter Institute
1,886 66,901 68,787
Totals per type
1,886 66,901 68,787

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Escherichia coli meta-databases BacDive
Escherichia coliSMS-3-5 organism-specific BioCyc
GOLD: Go0001982 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
641522624: Escherichia coli SECEC SMS-3-5 organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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