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Taxonomy browser (Solanum tuberosum)

Solanum tuberosum

Taxonomy ID: 4113 (for references in articles please use NCBI:txid4113)
Scientific name: Solanum tuberosum L.
homotypic synonym: Solanum tuberosum subsp. tuberosum
Genbank common name: potato
Inherited blast name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
common name: potatoes
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
   Entrez records   
Database name Subtree links Direct links
Nucleotide 82,742 82,595
Nucleotide EST 250,140 249,981
Nucleotide GSS 142,141 142,141
Protein 44,333 44,242
Structure 53 53
Genome 1 1
Popset 264 264
GEO Datasets 1,714 1,690
UniGene 18,188 18,188
PubMed Central 5,845 5,844
Gene 35,146 35,146
SRA Experiments 3,560 3,559
GEO Profiles 32,448 32,448
Protein Clusters 80 80
Identical Protein Groups 35,758 35,689
Bio Project 164 160
Bio Sample 5,558 5,555
Bio Systems 262 262
Assembly 2 2
Clone DB 74,425 74,425
Probe 646 646
PubChem BioAssay 45 45
Taxonomy 2 1

Comments and References:

Nota BeneGRIN (Sept 02, 2010)
Name verified on 2 September 2010 in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.

Nota BeneFlora of China - Solanaceae
Zhi-Yun Zhang, Anmin Lu & William G. D'Arcy. Solanaceae A. L. Jussieu. In Wu, Z. Y. & P. H. Raven, eds. 1994. Flora of China. Vol. 17 (Verbenaceae through Solanaceae). Science Press, Beijing, and Missouri Botanical Garden Press, St. Louis. 342 pp.

Nota BeneLinnaean Plant Names
The Linnaean Plant Name Typification Project. 2004. The Natural History Museum, Cromwell Rd., London, SW7 5BD, UK.

Nee M 1999
Nee M. 1999. Synopsis of Solanum in the New World. In Nee M, Symon DE, Lester RN, and Jessop JP (Eds.). Solanaceae IV: Advances in Biology and Utilization. The Royal Botanic Gardens, Kew, pp. 285-333.


Genome Information

Go to NCBI genomic BLAST page for Solanum tuberosum
Genome view: 13 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11 12 Pltd
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
EST SHOTGUN WGS ALL
JCVI - J. Craig Venter Institute
37,170 173,622 139,915 350,707
TIGR - The Institute for Genome Research
87,940 - - 87,940
WUGSC - Washington University, Genome Sequencing Center
- 1,923 - 1,923
WURPRI - Plant Research International
- - 585,938 585,938
Totals per type
125,110 175,545 725,853 1,026,508

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Solanum tuberosum L. taxonomy/phylogenetic Encyclopedia of life
3 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
2507525040: Solanum tuberosum DM 1-3 516 R44 organism-specific Integrated Microbial Genomes
Solanum tuberosum L. taxonomy/phylogenetic Integrated Taxonomic Information System
Solanum tuberosum taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Solanum tuberosum taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
potato nematodes taxonomy/phylogenetic Plant and Insect Parasitic Nematodes
Solanum tuberosum taxonomy/phylogenetic The International Plant Names Index
Solanum tuberosum taxonomy/phylogenetic TreeBase
2 records from this provider taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Solanum tuberosum organism-specific WebScipio - eukaryotic gene identification
diArk: Solanum tuberosum organism-specific diArk - a resource for eukaryotic genome research
Solanum tuberosum taxonomy/phylogenetic electronic Plant Information Centre
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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