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Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
   Entrez records   
Database name Direct links Subtree links Links from type
BioProject 34,675 34,675 -
BioSample 1,440,058 1,440,058 -
GEO DataSets 1,131 1,131 -
Identical Protein Groups 809,494 809,494 -
Nucleotide 155,201 155,201 -
PMC 3,987 3,987 -
Protein 810,746 810,746 -
SRA 1,538,262 1,538,262 -
Structure 20 20 -
Taxonomy 1 1 -

soil metagenome

Taxonomy ID: 410658 (for references in articles please use ncbitaxon:410658)
current name
soil metagenome
NCBI BLAST name: metagenomes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Mitochondrial genetic code: Translation table 2 (Vertebrate Mitochondrial)
Other names:
heterotypic synonym soil microbiomes
heterotypic synonym soil microbiome
includes soil microbiota
Lineage(full)
unclassified entries; unclassified sequences; metagenomes; ecological metagenomes

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
2708742846: Chloroflexi bacterium RBG_19FT_COMBO_47_15 organism-specific Integrated Microbial Genomes
2711768701: Candidatus Kaiserbacteria bacterium RIFOXYB1_FULL_46_14 organism-specific Integrated Microbial Genomes
2711768692: Candidatus Pacebacteria bacterium RIFOXYB1_FULL_39_46 organism-specific Integrated Microbial Genomes
2711768790: Deltaproteobacteria bacterium RIFOXYD12_FULL_57_12 organism-specific Integrated Microbial Genomes
2708742848: Thermodesulfovibrio sp. RBG_19FT_COMBO_41_18 organism-specific Integrated Microbial Genomes
2711768680: Candidatus Yanofskybacteria bacterium RIFOXYB1_FULL_44_29 organism-specific Integrated Microbial Genomes
2708742564: Euryarchaeota archaeon RBG_19FT_COMBO_56_21 organism-specific Integrated Microbial Genomes
2708742818: Candidatus Woesebacteria bacterium RBG_19FT_COMBO_42_9 organism-specific Integrated Microbial Genomes
2708742833: Deltaproteobacteria bacterium RBG_19FT_COMBO_60_16 organism-specific Integrated Microbial Genomes
2711768693: Candidatus Peribacteria bacterium RIFOXYB1_FULL_54_35 organism-specific Integrated Microbial Genomes
2711768675: Candidatus Woesebacteria bacterium RIFOXYB1_FULL_33_9 organism-specific Integrated Microbial Genomes
2708742817: Candidatus Woesebacteria bacterium RBG_19FT_COMBO_37_29 organism-specific Integrated Microbial Genomes
2711768789: Deltaproteobacteria bacterium RIFOXYD12_FULL_53_23 organism-specific Integrated Microbial Genomes
2711768784: Gammaproteobacteria bacterium RIFOXYD12_FULL_61_37 organism-specific Integrated Microbial Genomes
2711768682: Candidatus Magasanikbacteria bacterium RIFOXYB1_FULL_40_15 organism-specific Integrated Microbial Genomes
2708742826: candidate division Zixibacteria bacterium RBG_19FT_COMBO_42_43 organism-specific Integrated Microbial Genomes
2711768689: candidate division WWE3 bacterium RIFOXYB1_FULL_43_24 organism-specific Integrated Microbial Genomes
2786546105: Dehalobacter sp. KB-1_124TCB2 organism-specific Integrated Microbial Genomes
2708742853: Chloroflexi bacterium RBG_19FT_COMBO_49_13 organism-specific Integrated Microbial Genomes
2708742823: Candidatus Woesebacteria bacterium RBG_19FT_COMBO_47_8 organism-specific Integrated Microbial Genomes
2711768685: Candidatus Woesebacteria bacterium RIFOXYB1_FULL_47_31 organism-specific Integrated Microbial Genomes
2708742845: Candidatus Moranbacteria bacterium RBG_19FT_COMBO_42_6 organism-specific Integrated Microbial Genomes
2711768700: Candidatus Brennerbacteria bacterium RIFOXYB1_FULL_41_13 organism-specific Integrated Microbial Genomes
2711768710: Candidatus Azambacteria bacterium RIFOXYB1_FULL_40_33 organism-specific Integrated Microbial Genomes
2708742821: Armatimonadetes bacterium RBG_19FT_COMBO_69_19 organism-specific Integrated Microbial Genomes
2708742840: Thermodesulfovibrio sp. RBG_19FT_COMBO_42_12 organism-specific Integrated Microbial Genomes
2721755425: Planctomycetes bacterium RIFOXYD12_FULL_42_12 organism-specific Integrated Microbial Genomes
2708742841: Actinobacteria bacterium RBG_19FT_COMBO_70_19 organism-specific Integrated Microbial Genomes
2711768677: Candidatus Collierbacteria bacterium RIFOXYB1_FULL_49_13 organism-specific Integrated Microbial Genomes
2711768665: Candidatus Nomurabacteria bacterium RIFOXYB1_FULL_39_16 organism-specific Integrated Microbial Genomes
2711768670: Candidatus Woesebacteria bacterium RIFOXYB1_FULL_40_26 organism-specific Integrated Microbial Genomes
2711768662: Candidatus Staskawiczbacteria bacterium RIFOXYB1_FULL_38_37 organism-specific Integrated Microbial Genomes
2711768704: Candidatus Amesbacteria bacterium RIFOXYB1_FULL_47_9 organism-specific Integrated Microbial Genomes
2708742835: Candidatus Woykebacteria bacterium RBG_19FT_COMBO_43_10 organism-specific Integrated Microbial Genomes
2711768776: Elusimicrobia bacterium RIFOXYD12_FULL_66_9 organism-specific Integrated Microbial Genomes
2711768684: Candidatus Woesebacteria bacterium RIFOXYB1_FULL_31_120 organism-specific Integrated Microbial Genomes
2708742827: Deltaproteobacteria bacterium RBG_19FT_COMBO_58_16 organism-specific Integrated Microbial Genomes
2708742807: Candidatus Aminicenantes bacterium RBG_19FT_COMBO_58_17 organism-specific Integrated Microbial Genomes
2708742810: Candidatus Amesbacteria bacterium RBG_19FT_COMBO_48_16 organism-specific Integrated Microbial Genomes
2708742815: Deltaproteobacteria bacterium RBG_19FT_COMBO_56_10 organism-specific Integrated Microbial Genomes
2708742808: Bacteroidetes bacterium RBG_19FT_COMBO_42_7 organism-specific Integrated Microbial Genomes
2711768792: Ignavibacteria bacterium RIFOXYD12_FULL_36_8 organism-specific Integrated Microbial Genomes
2711768775: Deltaproteobacteria bacterium RIFOXYD12_FULL_55_16 organism-specific Integrated Microbial Genomes
2711768694: Bdellovibrionales bacterium RIFOXYB1_FULL_39_21 organism-specific Integrated Microbial Genomes
2708742830: Chloroflexi bacterium RBG_19FT_COMBO_62_14 organism-specific Integrated Microbial Genomes
2711768705: Candidatus Levybacteria bacterium RIFOXYB1_FULL_40_17 organism-specific Integrated Microbial Genomes
2711768774: Bdellovibrionales bacterium RIFOXYD12_FULL_39_22 organism-specific Integrated Microbial Genomes
2708742813: Candidatus Dadabacteria bacterium RBG_19FT_COMBO_40_33 organism-specific Integrated Microbial Genomes
2711768672: Candidatus Gottesmanbacteria bacterium RIFOXYB1_FULL_47_11 organism-specific Integrated Microbial Genomes
2930931642: Marivita sp. SBSPR2 organism-specific Integrated Microbial Genomes
2930928012: Marivita sp. SBSPR1 organism-specific Integrated Microbial Genomes
2708742820: Candidatus Muproteobacteria bacterium RBG_19FT_COMBO_61_10 organism-specific Integrated Microbial Genomes
2708742565: Candidatus Pacearchaeota archaeon RBG_19FT_COMBO_34_9 organism-specific Integrated Microbial Genomes
2708742816: candidate division WWE3 bacterium RBG_19FT_COMBO_53_11 organism-specific Integrated Microbial Genomes
2711768695: Elusimicrobia bacterium RIFOXYB1_FULL_48_9 organism-specific Integrated Microbial Genomes
2711768674: Candidatus Nealsonbacteria bacterium RIFOXYB1_FULL_40_15 organism-specific Integrated Microbial Genomes
2711768676: Candidatus Shapirobacteria bacterium RIFOXYB1_FULL_38_38 organism-specific Integrated Microbial Genomes
2711768779: Candidatus Edwardsbacteria bacterium RIFOXYD12_FULL_50_11 organism-specific Integrated Microbial Genomes
2711768668: Candidatus Moranbacteria bacterium RIFOXYB1_FULL_43_19 organism-specific Integrated Microbial Genomes
2711768777: Candidatus Magasanikbacteria bacterium RIFOXYD12_FULL_33_17 organism-specific Integrated Microbial Genomes
2711768667: Candidatus Staskawiczbacteria bacterium RIFOXYB1_FULL_37_44 organism-specific Integrated Microbial Genomes
2711768666: Candidatus Nomurabacteria bacterium RIFOXYB1_FULL_43_14 organism-specific Integrated Microbial Genomes
2708742852: Deltaproteobacteria bacterium RBG_19FT_COMBO_43_11 organism-specific Integrated Microbial Genomes
2711768673: candidate division WWE3 bacterium RIFOXYB1_FULL_43_12 organism-specific Integrated Microbial Genomes
2708742812: Bacteroidetes bacterium RBG_19FT_COMBO_42_10 organism-specific Integrated Microbial Genomes
2721755423: Burkholderiales bacterium RIFOXYD12_FULL_59_19 organism-specific Integrated Microbial Genomes
2708742842: Chloroflexi bacterium RBG_19FT_COMBO_56_12 organism-specific Integrated Microbial Genomes
2711768663: Candidatus Amesbacteria bacterium RIFOXYB1_FULL_47_12 organism-specific Integrated Microbial Genomes
2708742828: Actinobacteria bacterium RBG_19FT_COMBO_36_27 organism-specific Integrated Microbial Genomes
2711768786: Alphaproteobacteria bacterium RIFOXYD12_FULL_60_8 organism-specific Integrated Microbial Genomes
2708742832: Deltaproteobacteria bacterium RBG_19FT_COMBO_46_9 organism-specific Integrated Microbial Genomes
2711768706: Candidatus Amesbacteria bacterium RIFOXYB1_FULL_44_23 organism-specific Integrated Microbial Genomes
2708742849: Candidatus Aminicenantes bacterium RBG_19FT_COMBO_59_29 organism-specific Integrated Microbial Genomes
2711768709: candidate division WS6 bacterium RIFOXYB1_FULL_33_14 organism-specific Integrated Microbial Genomes
2711768781: Deltaproteobacteria bacterium RIFOXYD12_FULL_50_9 organism-specific Integrated Microbial Genomes
2711768780: Candidatus Staskawiczbacteria bacterium RIFOXYD12_FULL_37_10 organism-specific Integrated Microbial Genomes
2708742850: Chloroflexi bacterium RBG_19FT_COMBO_47_9 organism-specific Integrated Microbial Genomes
2711768664: Spirochaetes bacterium RIFOXYB1_FULL_32_8 organism-specific Integrated Microbial Genomes
2708742851: Chloroflexi bacterium RBG_19FT_COMBO_50_10 organism-specific Integrated Microbial Genomes
2711768661: Caulobacterales bacterium RIFOXYB1_FULL_67_16 organism-specific Integrated Microbial Genomes
2711768687: Candidatus Pacebacteria bacterium RIFOXYB1_FULL_44_10 organism-specific Integrated Microbial Genomes
2711768778: Candidatus Lambdaproteobacteria bacterium RIFOXYD12_FULL_49_8 organism-specific Integrated Microbial Genomes
2708742811: candidate division WWE3 bacterium RBG_19FT_COMBO_34_6 organism-specific Integrated Microbial Genomes
2711768703: Candidatus Woesebacteria bacterium RIFOXYB1_FULL_42_36 organism-specific Integrated Microbial Genomes
2711768793: Candidatus Wolfebacteria bacterium RIFOXYD12_FULL_48_21 organism-specific Integrated Microbial Genomes
2708742563: Euryarchaeota archaeon RBG_19FT_COMBO_69_17 organism-specific Integrated Microbial Genomes
2721755424: Sulfuricurvum sp. RIFOXYD12_FULL_44_77 organism-specific Integrated Microbial Genomes
2711768696: Candidatus Nomurabacteria bacterium RIFOXYB1_FULL_36_10 organism-specific Integrated Microbial Genomes
2708742839: Nitrospirae bacterium RBG_19FT_COMBO_55_12 organism-specific Integrated Microbial Genomes
2708742834: Microgenomates group bacterium RBG_19FT_COMBO_39_10 organism-specific Integrated Microbial Genomes
2711768711: Candidatus Roizmanbacteria bacterium RIFOXYB1_FULL_40_23 organism-specific Integrated Microbial Genomes
2708742814: Actinobacteria bacterium RBG_19FT_COMBO_54_7 organism-specific Integrated Microbial Genomes
2711768681: Candidatus Wolfebacteria bacterium RIFOXYB1_FULL_54_12 organism-specific Integrated Microbial Genomes
2711768678: candidate division WS6 bacterium RIFOXYB1_FULL_33_15 organism-specific Integrated Microbial Genomes
2711768787: Tenericutes bacterium RIFOXYD12_FULL_36_9 organism-specific Integrated Microbial Genomes
2711768690: Bdellovibrionales bacterium RIFOXYB1_FULL_37_110 organism-specific Integrated Microbial Genomes
2711768686: Candidatus Roizmanbacteria bacterium RIFOXYB1_FULL_41_27 organism-specific Integrated Microbial Genomes
2711768688: Candidatus Amesbacteria bacterium RIFOXYB1_FULL_47_13 organism-specific Integrated Microbial Genomes
2711768698: Candidatus Adlerbacteria bacterium RIFOXYB1_FULL_48_10 organism-specific Integrated Microbial Genomes
2681812918: Glomeribacter gigasporarum C organism-specific Integrated Microbial Genomes
2708742831: Planctomycetes bacterium RBG_19FT_COMBO_48_8 organism-specific Integrated Microbial Genomes
2708742844: Deltaproteobacteria bacterium RBG_19FT_COMBO_52_11 organism-specific Integrated Microbial Genomes
2708742825: Candidatus Eisenbacteria bacterium RBG_19FT_COMBO_70_11 organism-specific Integrated Microbial Genomes
2711768683: Candidatus Moranbacteria bacterium RIFOXYB1_FULL_44_23 organism-specific Integrated Microbial Genomes
2708742824: Nitrospirae bacterium RBG_19FT_COMBO_58_9 organism-specific Integrated Microbial Genomes
2711768669: Candidatus Staskawiczbacteria bacterium RIFOXYB1_FULL_32_11 organism-specific Integrated Microbial Genomes
2711768782: Deltaproteobacteria bacterium RIFOXYD12_FULL_56_24 organism-specific Integrated Microbial Genomes
2711768795: Chloroflexi bacterium RIFOXYD12_FULL_57_15 organism-specific Integrated Microbial Genomes
2711768671: Candidatus Curtissbacteria bacterium RIFOXYB1_FULL_41_59 organism-specific Integrated Microbial Genomes
2886190707: Aromatoleum sp. benz_m3 organism-specific Integrated Microbial Genomes
2711768702: Candidatus Woesebacteria bacterium RIFOXYB1_FULL_41_13 organism-specific Integrated Microbial Genomes
2708742822: Candidatus Portnoybacteria bacterium RIFCSPHIGHO2_01_FULL_39_19 organism-specific Integrated Microbial Genomes
2711768708: candidate division WWE3 bacterium RIFOXYB1_FULL_42_27 organism-specific Integrated Microbial Genomes
2711768679: Candidatus Vogelbacteria bacterium RIFOXYB1_FULL_42_16 organism-specific Integrated Microbial Genomes
2708742837: Betaproteobacteria bacterium RBG_19FT_COMBO_58_11 organism-specific Integrated Microbial Genomes
2711768697: Candidatus Veblenbacteria bacterium RIFOXYB1_FULL_43_13 organism-specific Integrated Microbial Genomes
2708742809: Candidatus Atribacteria bacterium RBG_19FT_COMBO_35_14 organism-specific Integrated Microbial Genomes
2651869889: Candidatus Udaeobacter copiosus organism-specific Integrated Microbial Genomes
2711768712: candidate division WWE3 bacterium RIFOXYB1_FULL_40_22 organism-specific Integrated Microbial Genomes
2708742843: Nitrospirae bacterium RBG_19FT_COMBO_42_15 organism-specific Integrated Microbial Genomes
2711768699: Candidatus Liptonbacteria bacterium RIFOXYB1_FULL_36_10 organism-specific Integrated Microbial Genomes
2708742829: Chloroflexi bacterium RBG_19FT_COMBO_48_23 organism-specific Integrated Microbial Genomes
2708742847: Deltaproteobacteria bacterium RBG_19FT_COMBO_46_12 organism-specific Integrated Microbial Genomes
2708742836: Syntrophobacterales bacterium RBG_19FT_COMBO_59_10 organism-specific Integrated Microbial Genomes
2711768707: Candidatus Peribacteria bacterium RIFOXYB1_FULL_57_12 organism-specific Integrated Microbial Genomes
2711768791: Gallionellales bacterium RIFOXYD12_FULL_53_10 organism-specific Integrated Microbial Genomes
2708742838: Chloroflexi bacterium RBG_19FT_COMBO_55_16 organism-specific Integrated Microbial Genomes
2708742819: Candidatus Aminicenantes bacterium RBG_19FT_COMBO_65_30 organism-specific Integrated Microbial Genomes
2711768783: Sulfurimonas sp. RIFOXYD12_FULL_33_39 organism-specific Integrated Microbial Genomes
2711768785: Candidatus Falkowbacteria bacterium RIFOXYD12_FULL_34_57 organism-specific Integrated Microbial Genomes
2711768794: Sulfurimonas sp. RIFOXYD12_FULL_36_11 organism-specific Integrated Microbial Genomes
2711768691: Candidatus Woesebacteria bacterium RIFOXYB1_FULL_38_16 organism-specific Integrated Microbial Genomes
2711768788: Candidatus Raymondbacteria bacterium RIFOXYD12_FULL_49_13 organism-specific Integrated Microbial Genomes
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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