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Taxonomy browser (Solanum lycopersicum)

Solanum lycopersicum

Taxonomy ID: 4081 (for references in articles please use NCBI:txid4081)
current name
Solanum lycopersicum L.
Genbank common name: tomato
NCBI BLAST name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic genbank synonym
Lycopersicon esculentum Mill.
heterotypic synonym
Lycopersicon esculentum var. esculentum
heterotypic synonym
Solanum esculentum Dunal
heterotypic synonym
Solanum lycopersicum var. humboldtii
Lineage( abbreviated )
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
   Entrez records   
Database name Subtree links Direct links
Nucleotide 799,320 797,039
Protein 45,287 45,231
Structure 59 59
Genome 1 1
Popset 364 364
GEO Datasets 3,567 3,553
PubMed Central 14,314 14,314
Gene 37,872 37,872
SRA Experiments 11,638 11,332
GEO Profiles 43,810 43,810
Protein Clusters 80 80
Identical Protein Groups 34,370 34,346
Bio Project 760 757
Bio Sample 10,701 10,511
Bio Systems 264 264
Assembly 9 9
Probe 4,451 4,431
PubChem BioAssay 226 226
Taxonomy 2 1

Comments and References:

Bohs L & Olmstead RG 1997
Bohs L and Olmstead RG. 1997. Phylogeny of Solanum (Solanaceae) subgenera based on ndhF sequence data. Systematic Botany 22 (1): 5-17.
Spooner DM et al. 1993
Spooner DM, Anderson GJ, Jansen RK. 1993. Chloroplast DNA evidence for the interrelationships of tomatoes, potatoes, and pepinos (Solanaceae). Amer. J. Botany 80 (6): 676-688.
Peralta, Knapp & Spooner (unpubl.)
Peralta, Knapp & Spooner, unpublished monograph, In: Solanaceae Genome Project Genomics Network, Cornell University - Solanum nomenclature.

Genome Information

Go to NCBI genomic BLAST page for Solanum lycopersicum
Genome view: 12 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11 12

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Lycopersicon esculentum taxonomy taxonomy/phylogenetic Arctos Specimen Database
Lycopersicon esculentum taxonomy/phylogenetic CalPhotos
2 records from this provider supplemental materials Dryad Digital Repository
Solanum lycopersicum L. taxonomy/phylogenetic Encyclopedia of life
127 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
2 records from this provider taxonomy/phylogenetic Integrated Taxonomic Information System
Solanum lycopersicum taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Solanum lycopersicum taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
5 records from this provider taxonomy/phylogenetic Plants of the World Online
4 records from this provider taxonomy/phylogenetic The International Plant Names Index
4 records from this provider taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Lycopersicon esculentum organism-specific WebScipio - eukaryotic gene identification
3 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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