Link to NCBI Front Page Taxonomy Logo
Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
Taxonomy browser (Solanum lycopersicum)

Solanum lycopersicum

Taxonomy ID: 4081 (for references in articles please use NCBI:txid4081)
current name
Solanum lycopersicum Dunal L.
Genbank common name: tomato
NCBI BLAST name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Lycopersicon esculentum Mill.
heterotypic synonym
Lycopersicon esculentum var. esculentum
heterotypic synonym
Solanum esculentum Dunal
heterotypic synonym
Solanum lycopersicum var. humboldtii
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
   Entrez records   
Database name Subtree links Direct links
Nucleotide 800,486 797,940
Protein 46,357 46,121
Structure 68 68
Genome 1 1
Popset 386 386
GEO Datasets 5,124 5,110
PubMed Central 21,026 21,026
Gene 37,873 37,873
SRA Experiments 20,132 19,678
GEO Profiles 43,810 43,810
Protein Clusters 80 80
Identical Protein Groups 34,472 34,424
BioProject 1,217 1,213
BioSample 19,340 19,100
Assembly 32 25
PubChem BioAssay 244 244
Taxonomy 2 1

Comments and References:

Bohs L & Olmstead RG 1997
Bohs L and Olmstead RG. 1997. Phylogeny of Solanum (Solanaceae) subgenera based on ndhF sequence data. Systematic Botany 22 (1): 5-17.
Spooner DM et al. 1993, doi:10.2307/2445438
Spooner DM, Anderson GJ, Jansen RK. 1993. Chloroplast DNA evidence for the interrelationships of tomatoes, potatoes, and pepinos (Solanaceae). Amer. J. Botany 80 (6): 676-688.
Peralta, Knapp & Spooner (unpubl.)
Peralta, Knapp & Spooner, unpublished monograph, In: Solanaceae Genome Project Genomics Network, Cornell University - Solanum nomenclature.

Genome Information

Go to NCBI genomic BLAST page for Solanum lycopersicum
Genome view: 12 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11 12

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
2 records from this provider taxonomy/phylogenetic Arctos Specimen Database
Lycopersicon esculentum taxonomy/phylogenetic CalPhotos
8 records from this provider supplemental materials Dryad Digital Repository
Solanum lycopersicum L. taxonomy/phylogenetic Encyclopedia of life
127 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
2 records from this provider taxonomy/phylogenetic Integrated Taxonomic Information System
Solanum lycopersicum taxonomy/phylogenetic Lifemap
Solanum lycopersicum taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
5 records from this provider taxonomy/phylogenetic Plants of the World Online
4 records from this provider taxonomy/phylogenetic The International Plant Names Index
4 records from this provider taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Lycopersicon esculentum organism-specific WebScipio - eukaryotic gene identification
3 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Show organism modifiers



Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


Comments and questions to info@ncbi.nlm.nih.gov

[Help] [Search] [NLM NIH] [Disclaimer]