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Taxonomy browser (Solanum lycopersicum)

Solanum lycopersicum

Taxonomy ID: 4081 (for references in articles please use NCBI:txid4081)
Scientific name: Solanum lycopersicum
current: Solanum lycopersicum
Genbank common name: tomato
Inherited blast name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
genbank synonym: Lycopersicon esculentum
 
current: Lycopersicon esculentum
synonym: Lycopersicon esculentum var. esculentum
synonym: Solanum esculentum
 
current: Solanum esculentum
synonym: Solanum lycopersicum var. humboldtii
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
   Entrez records   
Database name Subtree links Direct links
Nucleotide 82,881 82,590
Nucleotide EST 300,764 299,604
Nucleotide GSS 414,582 413,753
Protein 45,194 45,139
Structure 48 48
Genome 1 1
Popset 344 344
GEO Datasets 2,268 2,254
UniGene 18,051 18,051
PubMed Central 11,776 11,776
Gene 37,832 37,832
SRA Experiments 6,995 6,799
GEO Profiles 43,810 43,810
Protein Clusters 80 80
Identical Protein Groups 34,310 34,286
Bio Project 578 576
Bio Sample 7,015 6,870
Bio Systems 264 264
Assembly 8 8
Clone DB 228,218 228,218
Probe 4,451 4,431
PubChem BioAssay 226 226
Taxonomy 2 1

Comments and References:

Bohs L & Olmstead RG 1997
Bohs L and Olmstead RG. 1997. Phylogeny of Solanum (Solanaceae) subgenera based on ndhF sequence data. Systematic Botany 22 (1): 5-17.

Spooner DM et al. 1993
Spooner DM, Anderson GJ, Jansen RK. 1993. Chloroplast DNA evidence for the interrelationships of tomatoes, potatoes, and pepinos (Solanaceae). Amer. J. Botany 80 (6): 676-688.

Nota BenePeralta, Knapp & Spooner (unpubl.)
Peralta, Knapp & Spooner, unpublished monograph, In: Solanaceae Genome Project Genomics Network, Cornell University - Solanum nomenclature.


Genome Information

Go to NCBI genomic BLAST page for Solanum lycopersicum
Genome view: 12 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11 12
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CLONEEND PCR PRIMERWALK SHOTGUN TRANSPOSON ALL
SC - The Sanger Center
107,681 297 4,217 252,866 245 365,306
Totals per type
107,681 297 4,217 252,866 245 365,306

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Lycopersicon esculentum taxonomy taxonomy/phylogenetic Arctos Specimen Database
Lycopersicon esculentum taxonomy/phylogenetic CalPhotos
2 records from this provider supplemental materials Dryad Digital Repository
Solanum lycopersicum L. taxonomy/phylogenetic Encyclopedia of life
127 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
2 records from this provider taxonomy/phylogenetic Integrated Taxonomic Information System
Solanum lycopersicum taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Solanum lycopersicum taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
4 records from this provider taxonomy/phylogenetic The International Plant Names Index
4 records from this provider taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Lycopersicon esculentum organism-specific WebScipio - eukaryotic gene identification
3 records from this provider organism-specific diArk - a resource for eukaryotic genome research
5 records from this provider taxonomy/phylogenetic electronic Plant Information Centre
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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