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Taxonomy browser (Solanum lycopersicum)

Solanum lycopersicum

Taxonomy ID: 4081 (for references in articles please use NCBI:txid4081)
current name
Solanum lycopersicum L.
Genbank common name: tomato
NCBI BLAST name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Lycopersicon esculentum Mill.
heterotypic synonym
Lycopersicon esculentum var. esculentum
heterotypic synonym
Solanum esculentum Dunal
heterotypic synonym
Solanum lycopersicum var. humboldtii
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
   Entrez records   
Database name Subtree links Direct links
Nucleotide 800,195 797,715
Protein 46,245 46,010
Structure 59 59
Genome 1 1
Popset 381 381
GEO Datasets 4,883 4,869
PubMed Central 19,482 19,482
Gene 37,873 37,873
SRA Experiments 18,770 18,320
GEO Profiles 43,810 43,810
Protein Clusters 80 80
Identical Protein Groups 34,478 34,430
Bio Project 1,123 1,119
Bio Sample 17,890 17,667
Bio Systems 264 264
Assembly 15 13
Probe 4,451 4,431
PubChem BioAssay 244 244
Taxonomy 2 1

Comments and References:

Bohs L & Olmstead RG 1997
Bohs L and Olmstead RG. 1997. Phylogeny of Solanum (Solanaceae) subgenera based on ndhF sequence data. Systematic Botany 22 (1): 5-17.
Spooner DM et al. 1993, doi:10.2307/2445438
Spooner DM, Anderson GJ, Jansen RK. 1993. Chloroplast DNA evidence for the interrelationships of tomatoes, potatoes, and pepinos (Solanaceae). Amer. J. Botany 80 (6): 676-688.
Peralta, Knapp & Spooner (unpubl.)
Peralta, Knapp & Spooner, unpublished monograph, In: Solanaceae Genome Project Genomics Network, Cornell University - Solanum nomenclature.

Genome Information

Go to NCBI genomic BLAST page for Solanum lycopersicum
Genome view: 12 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11 12

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
2 records from this provider taxonomy/phylogenetic Arctos Specimen Database
Lycopersicon esculentum taxonomy/phylogenetic CalPhotos
8 records from this provider supplemental materials Dryad Digital Repository
Solanum lycopersicum L. taxonomy/phylogenetic Encyclopedia of life
127 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
2 records from this provider taxonomy/phylogenetic Integrated Taxonomic Information System
Solanum lycopersicum taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Solanum lycopersicum taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
5 records from this provider taxonomy/phylogenetic Plants of the World Online
4 records from this provider taxonomy/phylogenetic The International Plant Names Index
4 records from this provider taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Lycopersicon esculentum organism-specific WebScipio - eukaryotic gene identification
3 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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