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Taxonomy browser (Cryptococcus deneoformans)

Cryptococcus deneoformans

Taxonomy ID: 40410 (for references in articles please use NCBI:txid40410)
current name
Cryptococcus deneoformans Hagen & Boekhout, 2015 in [Hagen et al. (2015)]
holotype of Cryptococcus deneoformans: CBS:H:21965
culture from holotype of Cryptococcus deneoformans: CBS:6900, CBS:7697, B:3501, DBVPG:6228
NCBI BLAST name: basidiomycete fungi
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 4 (Mold Mitochondrial; Protozoan Mitochondrial; Coelenterate Mitochondrial; Mycoplasma; Spiroplasma)
Other names:
heterotypic synonym
Cryptococcus neoformans var. neoformans (San Felice) Vuill., 1901
homotypic synonym:
Filobasidiella neoformans var. neoformans
includes:
Cryptococcus neoformans var. neoformans MMRL751
Cryptococcus neoformans var. neoformans MMRL757
Cryptococcus neoformans var. neoformans MMRL760
common name(s) Cryptococcus neoformans serotype D
Lineage( full )
cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex
   Entrez records   
Database name Subtree links Direct links
Nucleotide 89,948 76,124
Protein 28,718 870
Structure 2 -
GEO Datasets 266 176
PubMed Central 112 112
Gene 13,763 1
SRA Experiments 963 775
Identical Protein Groups 10,828 381
BioProject 60 30
BioSample 845 761
Datasets Genome 5 1
PubChem BioAssay 74 12
Taxonomy 15 1

Comments and References:
Hagen et al. (2015)
Hagen F. et al. 2015. Recognition of seven species in the Cryptococcus gattii/Cryptococcus neoformans species complex. Fungal Genet Biol 78:16-48.
Diaz et al. 2000
Diaz, M.R., Boekhout, T., Theelen, B., and Fell, J.A. 2000. Molecular sequences analyses of the intergenic spacer (IGS) associated with rDNA of the two pathogenic varieties of the pathogenic yeast, Cryptococcus neoformans. System. Appl. Microbiol. 23: 535-545.
Boekhout et al. 2001
Boekhout, T. et al. 2001. Hybrid genotypes in the pathogenic yeast Cryptococcus neoformans. Microbiology 147: 891-907.
Kwon-Chung et al. (2017), doi:10.1128/mSphere.00357-16
Kwon-Chung K.J. et al. 2017. The Case for Adopting the “Species Complex” Nomenclature for the Etiologic Agents of Cryptococcosis. mSphere.
genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
2 records from this provider taxonomy/phylogenetic Index Fungorum
2 records from this provider taxonomy/phylogenetic MycoBank
Cryptococcus neoformans var. Neoformans taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
3 records from this provider organism-specific WebScipio - eukaryotic gene identification
5 records from provider organism-specific diArk - a resource for eukaryotic genome research
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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