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Taxonomy browser (Agathobacter rectalis)

Agathobacter rectalis

Taxonomy ID: 39491 (for references in articles please use NCBI:txid39491)
current name
Agathobacter rectalis (Hauduroy et al. 1937) Rosero et al. 2016
homotypic synonym:
"Pseudobacterium rectale" (Hauduroy et al. 1937) Krasil'nikov 1949, effective name 1)
Roseburia rectale
Eubacterium rectale (Hauduroy et al. 1937) Prévot 1938 (Approved Lists 1980)
type strain of Eubacterium rectale: ATCC:33656, VPI:0990, CIP:105953, VPI:0989†, ATCC:25578†
not considered type of Eubacterium rectale: personal::A1-86, DSM:17629, NCIMB:14373
basionym:
"Bacteroides rectalis" Hauduroy et al. 1937, effective name
NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 28,105 27,731 19
Protein 244,251 231,521 -
Structure 25 8 -
GEO Datasets 685 54 -
PubMed Central 77 77 -
Gene 16,766 3,432 -
SRA Experiments 329 324 -
Protein Clusters 2,013 2,013 -
Identical Protein Groups 180,379 177,899 -
BioProject 80 73 -
BioSample 1,814 1,785 2
Datasets Genome 783 778 -
PubChem BioAssay 3 3 -
Taxonomy 5 1 -

Notes:

Comments and References:

type strains
Eubacterium rectale was described with type strains ATCC 33656 and VPI 0989. The genome was sequenced from ATCC 33656 (CP001107) but these strains were later lost in both collections. Strain A1-86 = DSM 17629 = NCIMB 14373 was suggested to serve as the neotype strain. The request was denied by the Judicial Commission in Opinion 100. Strain VPI 0990 (=ATCC 33656=CIP 105953) was designated a replacement strain for its co-identical counterpart VPI 0989 (=ATCC 25578).
Duncan SH & Flint HJ (2008)
Duncan, S.H., and Flint, H.J. "Proposal of a neotype strain (A1-86) for Eubacterium rectale. Request for an opinion." Int. J. Syst. Evol. Microbiol. (2008) 58:1735-1736.
Hauduroy P et al. (1937)
Hauduroy, P., Ehringer, G., Urbain, A., Guillot, G., and Magrou, J.: Dictionaire des bactéries pathogènes. Masson et Cie, Paris (1937). [No PubMed record available.]
JUDICIAL OPINION 100, 101, 102 (2020), doi:10.1099/ijsem.0.004390
Arahal, D.R. "Opinions 100, 101 and 102." Int. J. Syst. Evol. Microbiol. (2020) 70(9):5177-5181.
Krasil'nikov NA (1949)
Krasil'nikov, N.A.: Guide to the Bacteria and Actinomycetes [Opredelitelv Bakterii i Actinomicetov], (1949). Akad. Nauk SSSR, Moscow, pp. 1-830. [No PubMed record available.]
Prévot AR (1938)
Prévot, A.R. "Etudes de systematique bacterienne." Ann. Inst. Pasteur (Paris) (1938) 60:285-307. [No PubMed record available.]
Rosero JA et al. (2016)
Rosero, J.A., Killer, J., Sechovcova, H., Mrazek, J., Benada, O., Fliegerova, K., Havlik, J., and Kopecny, J. "Reclassification of Eubacterium rectale (Hauduroy et al., 1937) Prevot 1938 in a new genus Agathobacter gen. nov. as Agathobacter rectalis comb. nov., and description of Agathobacter ruminis sp. nov., isolated from the rumen contents of sheep and cows." Int. J. Syst. Evol. Microbiol. (2016) 66:768-773.
Rosero JA et al. (2016b)
Rosero, J.A., Killer, J., Sechovcova, H., Mrazek, J., Benada, O., Fliegerova, K., Havlik, J., and Kopecny, J. "Reply to the Letter to the Editor by Paul O. Sheridan, Sylvia H. Duncan, Alan W. Walker, Karen P. Scott, Petra Louis and Harry J. Flint, referring to our paper 'Reclassification of Eubacterium rectale (Prevot et al. 1967) in a new genus Agathobacter gen. nov., as Agathobacter rectalis comb. nov., within the family Lachnospiraceae, and description of Agathobacter ruminis sp. nov., from the rumen', Int J Syst Evol Microbiol, DOI 10.1099/ijsem.0.000788." Int. J. Syst. Evol. Microbiol. (2016) 66:2107. [No abstract available.]
Sheridan PO et al. (2016)
Sheridan, P.O., Duncan, S.H., Walker, A.W., Scott, K.P., Louis, P., and Flint, H.J. "Objections to the proposed reclassification of Eubacterium rectale as Agathobacter rectalis." Int. J. Syst. Evol. Microbiol. (2016) 66:2106. [No abstract available.]
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Zuo G & Hao B (2016)
Zuo, G., and Hao, B. "Whole-genome-based phylogeny supports the objections against the reclassification of Eubacterium rectale to Agathobacter rectalis." Int. J. Syst. Evol. Microbiol. (2016) 66:2451. [No abstract available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Agathobacter rectalis meta-databases BacDive - Free access to bacterial information database
4 records from this provider organism-specific BioCyc
Eubacterium rectale (Hauduroy et al. 1937) PrA%A9vot 1938 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
GOLD: 96 Organisms organism-specific Genomes On Line Database
Eubacterium rectale culture/stock collections Global Catalogue of Microorganisms
70 records from this provider organism-specific Integrated Microbial Genomes
Agathobacter rectalis (T) | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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