Link to NCBI Front Page Taxonomy Logo
Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy Books
   
Taxonomy browser (Phaseolus vulgaris)

Phaseolus vulgaris

Taxonomy ID: 3885 (for references in articles please use NCBI:txid3885)
Scientific name: Phaseolus vulgaris L.
Inherited blast name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
common name: French bean
common name: kidney bean
common name: string bean
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Phaseolus
   Entrez records   
Database name Subtree links Direct links
Nucleotide 169,884 169,868
Nucleotide EST 128,868 128,868
Nucleotide GSS 563,159 563,159
Protein 72,772 72,758
Structure 32 32
Genome 1 1
Popset 372 372
GEO Datasets 423 423
PubMed Central 6,410 6,410
Gene 28,264 28,264
SRA Experiments 1,370 1,345
Protein Clusters 77 77
Identical Protein Groups 32,783 32,770
Bio Project 94 93
Bio Sample 1,420 1,415
Bio Systems 262 262
Assembly 2 2
Clone DB 161,696 161,696
Probe 4,832 4,832
PubChem BioAssay 302 302
Taxonomy 3 1

Comments and References:

Nota BeneGRIN taxonomy
Name verified on date of entry into database in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.

Nota BeneLegumeWeb
Name verified on date of entry into database in: International Legume Database & Information Service World Database of Legumes, vers. 6.05.

Nota BeneTROPICOS (Aug 13, 2015)
Name accessed on 13 August 2015 in: Tropicos.org. Missouri Botanical Garden, 2008 - 4344 Shaw Boulevard, Saint Louis, Missouri 63110, U.S.A. on line at: http://www.tropicos.org/


Genome Information

Go to NCBI genomic BLAST page for Phaseolus vulgaris
Genome view: 12 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11 Pltd
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CLONEEND SHOTGUN ALL
AGI - Arizona Genomics Institute
89,017 - 89,017
HAGSC - Hudson Alpha Genome Sequencing Center
160,228 - 160,228
PURDUE - Purdue University, Genomics Facility
- 1,454 1,454
Totals per type
249,245 1,454 250,699

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Phaseolus vulgaris taxonomy taxonomy/phylogenetic Arctos Specimen Database
Phaseolus lunatus L. taxonomy/phylogenetic Encyclopedia of life
12 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
2614208522: Phaseolus vulgaris organism-specific Integrated Microbial Genomes
Phaseolus vulgaris L. taxonomy/phylogenetic Integrated Taxonomic Information System
Phaseolus vulgaris taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
plazi taxonomy/phylogenetic Plazi
Phaseolus vulgaris taxonomy/phylogenetic The International Plant Names Index
Phaseolus vulgaris L. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Phaseolus vulgaris organism-specific WebScipio - eukaryotic gene identification
diArk: Phaseolus vulgaris organism-specific diArk - a resource for eukaryotic genome research
Phaseolus vulgaris taxonomy/phylogenetic electronic Plant Information Centre
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Show organism modifiers



Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


Comments and questions to info@ncbi.nlm.nih.gov

[Help] [Search] [NLM NIH] [Disclaimer]