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Taxonomy browser (Glycine max)

Glycine max

Taxonomy ID: 3847 (for references in articles please use NCBI:txid3847)
Scientific name: Glycine max (L.) Merr.
Genbank common name: soybean
Inherited blast name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
common name: soybeans
Lineage( abbreviated )
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Soja
   Entrez records   
Database name Direct links
Nucleotide 236,428
Nucleotide EST 1,461,724
Nucleotide GSS 553,482
Protein 198,278
Structure 147
Genome 1
Popset 288
Conserved Domains 3
GEO Datasets 7,581
UniGene 35,982
PubMed Central 10,995
Gene 73,223
SRA Experiments 8,278
GEO Profiles 672,870
Protein Clusters 16,746
Identical Protein Groups 105,375
Bio Project 757
Bio Sample 8,783
Bio Systems 268
Assembly 9
Clone DB 142,501
Probe 11,012
PubChem BioAssay 335
Taxonomy 1

Comments and References:

Nota BeneTROPICOS (Jan 26, 2010)
Name verified on 26 January 2010 in: Tropicos.org. Missouri Botanical Garden, 2008 - 4344 Shaw Boulevard, Saint Louis, Missouri 63110, U.S.A. on line at: http://www.tropicos.org/

Nota BeneGRIN (Jan 26, 2010)
Name verified on 26 January 2010 in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.


Genome Information

Go to NCBI genomic BLAST page for Glycine max
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
454 CLONEEND EST GSS SHOTGUN WGS ALL
AGI - Arizona Genomics Institute
- 264,078 - - - - 264,078
JCVI - J. Craig Venter Institute
- 13,511 - - - - 13,511
JGI - Joint Genome Institute, U.S. Department of Energy
- - - - - 13,035,801 13,035,801
TIGR - The Institute for Genome Research
- 7,663 - - - - 7,663
UIUC - University of Illinois at Urbana-Champaign
718,589 - - - - - 718,589
UOKNOR - University of Oklahoma Norman Campus, Advanced Center for Genome Technology
- - - - 22,096 - 22,096
WUGSC - Washington University, Genome Sequencing Center
- 29,117 157,399 32,000 - - 218,516
Totals per type
718,589 314,369 157,399 32,000 22,096 13,035,801 14,280,254

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Glycine max taxonomy taxonomy/phylogenetic Arctos Specimen Database
Glycine max (L.) Merr. taxonomy/phylogenetic Encyclopedia of life
7 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
2 records from this provider organism-specific Integrated Microbial Genomes
Glycine max (L.) Merr. taxonomy/phylogenetic Integrated Taxonomic Information System
Glycine max taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Glycine max taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
soybean nematodes taxonomy/phylogenetic Plant and Insect Parasitic Nematodes
plazi taxonomy/phylogenetic Plazi
Glycine max taxonomy/phylogenetic The International Plant Names Index
Glycine max taxonomy/phylogenetic TreeBase
Glycine max (L.) Merr. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Glycine max organism-specific WebScipio - eukaryotic gene identification
3 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Glycine max taxonomy/phylogenetic electronic Plant Information Centre
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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