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Taxonomy browser (Glycine max)

Glycine max

Taxonomy ID: 3847 (for references in articles please use NCBI:txid3847)
Scientific name: Glycine max (L.) Merr.
Genbank common name: soybean
Inherited blast name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
common name: soybeans
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Soja
   Entrez records   
Database name Direct links
Nucleotide 236,409
Nucleotide EST 1,461,724
Nucleotide GSS 553,482
Protein 198,277
Structure 147
Genome 1
Popset 287
Conserved Domains 3
GEO Datasets 7,563
UniGene 35,982
PubMed Central 10,851
Gene 73,223
SRA Experiments 6,012
GEO Profiles 672,870
Protein Clusters 16,746
Bio Project 749
Bio Sample 6,632
Bio Systems 268
Assembly 9
Clone DB 142,501
Probe 11,012
PubChem BioAssay 335
Taxonomy 1

Comments and References:

Nota BeneTROPICOS (Jan 26, 2010)
Name verified on 26 January 2010 in: Tropicos.org. Missouri Botanical Garden, 2008 - 4344 Shaw Boulevard, Saint Louis, Missouri 63110, U.S.A. on line at: http://www.tropicos.org/

Nota BeneGRIN (Jan 26, 2010)
Name verified on 26 January 2010 in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.


Genome Information

Go to NCBI genomic BLAST page for Glycine max
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
454 CLONEEND EST GSS SHOTGUN WGS ALL
AGI - Arizona Genomics Institute
- 264,078 - - - - 264,078
JCVI - J. Craig Venter Institute
- 13,511 - - - - 13,511
JGI - Joint Genome Institute, U.S. Department of Energy
- - - - - 13,035,801 13,035,801
TIGR - The Institute for Genome Research
- 7,663 - - - - 7,663
UIUC - University of Illinois at Urbana-Champaign
718,589 - - - - - 718,589
UOKNOR - University of Oklahoma Norman Campus, Advanced Center for Genome Technology
- - - - 22,096 - 22,096
WUGSC - Washington University, Genome Sequencing Center
- 29,117 157,399 32,000 - - 218,516
Totals per type
718,589 314,369 157,399 32,000 22,096 13,035,801 14,280,254

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Glycine max (L.) Merr. taxonomy/phylogenetic Encyclopedia of life
7 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
2 records from this provider organism-specific Integrated Microbial Genomes
Glycine max (L.) Merr. taxonomy/phylogenetic Integrated Taxonomic Information System
Glycine max taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Glycine max taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
soybean nematodes taxonomy/phylogenetic Plant and Insect Parasitic Nematodes
plazi taxonomy/phylogenetic Plazi
Glycine max taxonomy/phylogenetic The International Plant Names Index
Glycine max taxonomy/phylogenetic TreeBase
Glycine max (L.) Merr. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Glycine max organism-specific WebScipio - eukaryotic gene identification
3 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Glycine max taxonomy/phylogenetic electronic Plant Information Centre
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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