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Taxonomy browser (Glycine max)

Glycine max

Taxonomy ID: 3847
Genbank common name: soybean
Inherited blast name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Other names:
common name: soybeans
authority: Glycine max (L.) Merr.
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
   Entrez records   
Database name Direct links
Nucleotide 217,321
Nucleotide EST 1,461,724
Nucleotide GSS 553,482
Protein 199,007
Structure 143
Genome 1
Popset 186
SNP 16,892,873
Domains 3
GEO Datasets 7,013
UniGene 35,982
PubMed Central 9,526
Gene 68,210
SRA Experiments 3,858
Probe 11,012
Assembly 6
Bio Project 443
Bio Sample 4,402
Bio Systems 268
Clone DB 142,501
GEO Profiles 672,870
PubChem BioAssay 327
Protein Clusters 12,206
Taxonomy 1

Comments and References:

Nota BeneTROPICOS (Jan 26, 2010)
Name verified on 26 January 2010 in: Tropicos.org. Missouri Botanical Garden, 2008 - 4344 Shaw Boulevard, Saint Louis, Missouri 63110, U.S.A. on line at: http://www.tropicos.org/

Nota BeneGRIN (Jan 26, 2010)
Name verified on 26 January 2010 in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.


Genome Information

Go to NCBI genomic BLAST page for Glycine max
See the NCBI Genome map in MapViewer
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
454 CLONEEND EST GSS SHOTGUN WGS ALL
AGI - Arizona Genomics Institute
- 264,078 - - - - 264,078
JCVI - J. Craig Venter Institute
- 13,511 - - - - 13,511
JGI - Joint Genome Institute, U.S. Department of Energy
- - - - - 13,035,801 13,035,801
TIGR - The Institute for Genome Research
- 7,663 - - - - 7,663
UIUC - University of Illinois at Urbana-Champaign
718,589 - - - - - 718,589
UOKNOR - University of Oklahoma Norman Campus, Advanced Center for Genome Technology
- - - - 22,096 - 22,096
WUGSC - Washington University, Genome Sequencing Center
- 29,117 157,399 32,000 - - 218,516
Totals per type
718,589 314,369 157,399 32,000 22,096 13,035,801 14,280,254

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Glycine max (L.) Merr. taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0002830 organism-specific Genomes On Line Database
GOLD: Go0002829 organism-specific
GOLD: Go0039216 organism-specific
GOLD: Go0117311 organism-specific
GOLD: Go0097274 organism-specific
GOLD: Go0060594 organism-specific
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
2614208538: Glycine max cultivar Williams 82 2 organism-specific Integrated Microbial Genomes
2507525014: Glycine max cultivar Williams 82 organism-specific
Glycine max (L.) Merr. taxonomy/phylogenetic Integrated Taxonomic Information System
Glycine max taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
soybean nematodes taxonomy/phylogenetic Plant and Insect Parasitic Nematodes
plazi taxonomy/phylogenetic Plazi
Glycine max taxonomy/phylogenetic The International Plant Names Index
Glycine max taxonomy/phylogenetic TreeBase
Glycine max (L.) Merr. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Glycine max strain Enrei organism-specific WebScipio - eukaryotic gene identification
WebScipio: Glycine max organism-specific
diArk: Glycine max organism-specific diArk a resource for eukaryotic genome research
diArk: Glycine max strain Enrei organism-specific
Glycine max taxonomy/phylogenetic electronic Plant Information Centre
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.
To see LinkOut links in this lineage click here

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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