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Taxonomy browser (Yersinia pestis Nepal516)

Yersinia pestis Nepal516

Taxonomy ID: 377628 (for references in articles please use NCBI:txid377628)
current name
Yersinia pestis Nepal516
Yersinia pestis str. Nepal516
Yersinia pestis strain Nepal516
NCBI BLAST name: enterobacteria
Rank: strain
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( abbreviated )
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia
   Entrez records   
Database name Direct links
Nucleotide 131
Protein 9,656
Structure 2
Genome 1
GEO Datasets 1
PubMed Central 1
Gene 4,206
Identical Protein Groups 5,192
BioProject 3
BioSample 2
Assembly 2
Taxonomy 1

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.
Chain PSG et al. (2006)
Chain, P.S.G., Hu, P., Malfatti, S.A., Radnedge, L., Larimer, F., Vergez, L.M., Worsham, P., Chu, M.C., and Andersen, G.L. "Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen." J. Bacteriol. (2006) 188:4453-4463.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Yersinia pestis Nepal516 organism-specific BioCyc
GOLD: Go0000344 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
2 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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